Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0057 |
Symbol | |
ID | 4689776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 58751 |
End bp | 59677 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639833051 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_980304 |
Protein GI | 121602975 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.620754 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.137866 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTGCCCG CCTACATCAC CCATCCCGAT TGCGCCCTCC ACGAAATGGG TGCCCACCAT CCCGAATGCC CCGAGCGTCT GGGCGCCATC AACGACATGC TGCTGGTCAA GGGCCTGCTC GACTACATGC ATCCCTACGA TGCGCCGCTG GCCACGCCGG AGCAGCTGGC CCATGCGCAT TCCTCGCTGT ATGTCAGCGA ACTCATGGCG GCCTCCCCGG CGGAGGGCTA CCACAAGGTC GATCCCGACA CCGACATGAA CCCGTTCACC GTGCGGGCGG CATTGCGCGC GGCCGGCTCC GTGGTGCTGG CCACCGACCT GGTGCTGACG GGCGATGCAC CGAGCGCTTT TTGCTGCGTG CGCCCGCCCG GCCACCATGC GCAGCGCGAC GCCGCCATGG GCTTTTGCTT TTTCAACAAC GTCGCCGTCG GCATCCGCCA TGCGCTGACG CAGCACGGCC TGCAGCGCGT CGCGCTGATT GATTTCGACG TGCACCACGG CAACGGCAGC GAGGACATCT TTCGCGGCGA CGAGCGGGTG CTGATGTGCT CGATCTTCGA GCAGGGCATC TACCCGTTCA CCGGCGAAAA CGCCACGGGT CCGAATATGG TCAATGTCGG CCTGCCCTCG CGCTCGGGCA GCGACAAGTT CCGCGAAGCC GTCACCAGCC ACTGGCTGCC CGCGCTGGAC GCCTTCAAGC CCGAGCTGAT CTATGTGTCG GCCGGCTTTG ACGGCCACCG CGAGGACGAC ATGGGCAACC TGGCCCTGGT CGAGGCCGAC TACGAATGGG TTACCAAAAA AATCATGGCG GTGGCCGAGC GCCATTGCCA GGGCCGCGTC ATCTCGTGCC TGGAAGGCGG TTACGTCCTG AGCCCACTCG CGCGCAGTGT TGCCGCGCAT GTCAAGGTGC TGATTGGCGC CGACTGA
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Protein sequence | MLPAYITHPD CALHEMGAHH PECPERLGAI NDMLLVKGLL DYMHPYDAPL ATPEQLAHAH SSLYVSELMA ASPAEGYHKV DPDTDMNPFT VRAALRAAGS VVLATDLVLT GDAPSAFCCV RPPGHHAQRD AAMGFCFFNN VAVGIRHALT QHGLQRVALI DFDVHHGNGS EDIFRGDERV LMCSIFEQGI YPFTGENATG PNMVNVGLPS RSGSDKFREA VTSHWLPALD AFKPELIYVS AGFDGHREDD MGNLALVEAD YEWVTKKIMA VAERHCQGRV ISCLEGGYVL SPLARSVAAH VKVLIGAD
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