Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_0028 |
Symbol | |
ID | 4687104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 25129 |
End bp | 27234 |
Gene Length | 2106 bp |
Protein Length | 701 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639833022 |
Product | vault protein inter-alpha-trypsin subunit |
Protein accession | YP_980275 |
Protein GI | 121602946 |
COG category | [R] General function prediction only |
COG ID | [COG2304] Uncharacterized protein containing a von Willebrand factor type A (vWA) domain |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.880979 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.680993 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGTCAC CACTTTCCCC CAATGCCCGC GCCGCGCGCT GGCTCTGGCT TGCCACCGCC AGCCTGGCGA CGGTCTGTTT CATCGCGCTG TCGGCCAGCC CCGCGCAGGC GCAGGACAAC GGCAGCGCGC CCCGGCTGAA AACCGAAAGC CCGTACTTCT TCGTCAAGAG CGACACGCCC GGCGTGGACG CGCTGCCGCT CAAATCCACC TCGGTCGATG TGCAGATTTC CGGCGTGATT GCCGATGTCA CCGTCACCCA GCGCTACAAA AACGAAGGCC AGCGCGCCAT CGAGGCGCGC TATGTCTTTC CCGCCTCGAC GCGCGCCGCC GTCTATGGCA TGAACGTGCG GCTGGCCGAC CGCCTGATCA CCGCCAACAT CCGCGAAAAG CAGCAGGCGC GCATCGAATA CGACGCCGCC AGGAACGAAG GCAAGACCGC CGCGCTGCTG GAGCAGCACC TGCCCAACGT GTTCGAGATG AACGTCGCCA ACATCCTGCC CGGCGACGAC GTGAAGGTGG AATTGCGCTA CACCGAACTG TTGGTGCCGC AGTCGGGCGC TTACCAGTTC GTCTTTCCCA CGGTGGTCGG CCCGCGCTAC AACAGCGCGC AATCCAGCCA GGCGCTGGCT CAATGGGTAG CCCAGCCCTT CTTGCCAGCG GGTCAGGCGT CGGCGACGGC GTTTGACATC AAGGTCAAGC TGGCCACGCC CATCGGCATC AAGGAAGTGT CTTCCCACTC GCACAGCATC GACGTGACCA AGGACGGCGA CGAACGCGCC GCCGTTTCCT TGCGCAGCGG CGATAAGCCC GGCAACAACC GCGACTTCAT CCTCGACTAC CGGCTGGCCG GCGAGCGCAT CGAGTCGGGC GTGATGCTGT ATCAGGGCAC GCCGGGCAAT GGCGCCAGCG GCGAGAACTT CTTCCTCGCC ATGATCGAGC CGCCCAAGCA GGTCGCGGCG CAGGCCATCA GCCCACGCGA CTACATCTTC GTCGTCGATA TCTCGGGCTC GATGCACGGC TTTCCGCTCG ACACGGCCAA GACCTTGATG CGCGAGCTGA TCGGCAAGCT GCGCCCCAGC GACACCTTCA ACGTGCTGCT GTTCTCGGGC AGCAACCGCT TCCTGAGCCC CGCATCGGTC CCCGCCACGC AGGCCAATAT CGAGCAGGCG GTGCGCACCA TCGACGAAAT GGGCGGCGGT GGCGGCACCG AACTGATTCC GGCGCTCAAG CGCGTGTATG CCGAACCCAA GGCGGCCGAC GTGTCGCGCA CCGTGGTCGT GGTGACCGAC GGCTTCGTCA CCGTCGAGCG CGAAGCCTTC GAGCTGGTGC GGCGCAACCT GTCGCAGGCG AACCTGTTTT CATTCGGCAT CGGCTCGTCG GTCAACCGCC ACCTGATGGA AGGCCTGGCG CGCGCCGGCA TGGGCGAGCC CTTCATCATC ACCGAGCCAT CGCAGGCCAG GGCCCAGGCC GAGCGCTTTC GCCGGCTGAT CGAGTCGCCG GTGCTGACCA GCGTGAAGCT GCGCTTCGAG GGCCTGGACG TGTATGACGT GGAGCCCGCG CAACTGCCCG ACGTGCTGGG CGAGCGCCCG GTGGTGGTGT TTGGCAAATG GCGCGGCACG CCAGCGGGCC AGGTCATCAT CGACGGCCAG AGCGCCACCG GCCCGTACCG CAATGCCGTG ACCGTGCCAG CGCAAAACGG CCAGAACACG GCCGCGCTGC GCTACCTTTG GGCACGCCAC CGCATCGCCA GCCTGTCGGA CCAGGAAGCG CTCGAAGGCG GCGACGCGCA CCGCCAGCGC ATCACCGAGC TGGGCCTGCA GTACAACCTG CTGACGCAGT ACACCAGCTT CCTGGCGGTG GACCAGGTGG TGCGCAACCT GCAGCCGCAG GACGCTACCG GCGTGAACCA GCCTTCGCCG CTGCCGCAGG GCGTGAGCAA CCTGGCGGTG GGCGAAGTGT CCATCGGCGC CGCAGTGCCC GGCACGCCCG AGCCCGCCAC CTGGGGCGCG GTGCTGGTGC TGCTGTCGGT GCTGGCCCTG CTGGCGCGGC GCGAGCGCAG GGCGTCGCGC GGCAGGCCGG GTAGCGCCGC CCGCTTCACC GCCTGA
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Protein sequence | MESPLSPNAR AARWLWLATA SLATVCFIAL SASPAQAQDN GSAPRLKTES PYFFVKSDTP GVDALPLKST SVDVQISGVI ADVTVTQRYK NEGQRAIEAR YVFPASTRAA VYGMNVRLAD RLITANIREK QQARIEYDAA RNEGKTAALL EQHLPNVFEM NVANILPGDD VKVELRYTEL LVPQSGAYQF VFPTVVGPRY NSAQSSQALA QWVAQPFLPA GQASATAFDI KVKLATPIGI KEVSSHSHSI DVTKDGDERA AVSLRSGDKP GNNRDFILDY RLAGERIESG VMLYQGTPGN GASGENFFLA MIEPPKQVAA QAISPRDYIF VVDISGSMHG FPLDTAKTLM RELIGKLRPS DTFNVLLFSG SNRFLSPASV PATQANIEQA VRTIDEMGGG GGTELIPALK RVYAEPKAAD VSRTVVVVTD GFVTVEREAF ELVRRNLSQA NLFSFGIGSS VNRHLMEGLA RAGMGEPFII TEPSQARAQA ERFRRLIESP VLTSVKLRFE GLDVYDVEPA QLPDVLGERP VVVFGKWRGT PAGQVIIDGQ SATGPYRNAV TVPAQNGQNT AALRYLWARH RIASLSDQEA LEGGDAHRQR ITELGLQYNL LTQYTSFLAV DQVVRNLQPQ DATGVNQPSP LPQGVSNLAV GEVSIGAAVP GTPEPATWGA VLVLLSVLAL LARRERRASR GRPGSAARFT A
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