| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4318 |
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| Symbol | |
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| ID | 4670444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008766 |
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| Strand | + |
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| Start bp | 60578 |
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| End bp | 61114 |
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| Gene Length | 537 bp |
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| Protein Length | 178 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639826982 |
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| Product | conjugal transfer peptidase TraF |
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| Protein accession | YP_974144 |
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| Protein GI | 121582615 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 0.666269 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.975126 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCCGCA TCCTGAAACG CATCACGACC GGCGTTGCCA TCGCCGGCGT GGCCGCCCTG
GTGCTGGCCG CTGGCGGCTA TGCCGCCGGT GCCCGCATCA ACACCACCAA GAGCATTCCG
GTCGGCCTGT ACTGGACGAG CAGCGCGCCG GTGGAGAAGG GCGCTTACGT GCTTTGGTGC
CCGCCGAAGG TCGGCGTGTT CGATGACGCC AAGGAAAGGG GCTACATCGG GGCCGGGTTC
TGCCCTGGCG ACTACGGCTA CATGATGAAG CGCGTTTTAG CCGCTAAAGA CGATGCCGTA
TCGGTGGCCG ATGACGGCGT GCGTGTGAAT GGCGAGCTGC TGGCCCACAG CAAGCCGATC
CAGGCCGACA AGTCCGGGCG GCCCCTGCCG CGCTTCCAGG CCAGCACCTA CACGCTGGGC
AGCGCCGAGC TGCTGCTTAT GTCGGACGTG AGCGACACGT CTTTCGACGG GCGCTACTTC
GGCCCCATCA ACCGTTCTCA AGTTCAGACC GTGATCCGTC CGGTCATCAC CTGGTAG
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| Protein sequence | MSRILKRITT GVAIAGVAAL VLAAGGYAAG ARINTTKSIP VGLYWTSSAP VEKGAYVLWC
PPKVGVFDDA KERGYIGAGF CPGDYGYMMK RVLAAKDDAV SVADDGVRVN GELLAHSKPI
QADKSGRPLP RFQASTYTLG SAELLLMSDV SDTSFDGRYF GPINRSQVQT VIRPVITW
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