| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4317 |
|---|
| Symbol | |
|---|
| ID | 4670441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008766 |
|---|
| Strand | + |
|---|
| Start bp | 58677 |
|---|
| End bp | 60581 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639826981 |
|---|
| Product | conjugal transfer coupling protein TraG |
|---|
| Protein accession | YP_974143 |
|---|
| Protein GI | 121582614 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.184857 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA AGATGAACAA CGCCGTGGGG CCGCAGGTTC GCAGCGCAAA GGCAAAGACC
CCCAAGCTCT TGCCGATCCT CGGCGGGGTA TCCCTGGTCG GCGGCCTCCA GGCCGCGACA
CAGTTCTTCG CCTACACGTT CCAGTATCAC GCGAGCCTCG GGGCCAACCT TGGGCACGTG
TACGCGCCCT GGTCGATCCT GAACTGGTCG GCGAAGTGGT ACAGCCAGTA CCCCGACGAG
ATCATGCGGG CCGGCAGCAT CGGCATGGTG ACTGCCACCG TGGGCCTGCT GGGCGTGGCC
GTGGCGAAAG TCGTCACGTC CAACAGCTCG AAGGCGAACG AGTACCTGCA CGGTTCGGCC
CGCTGGGCCG AGAAGAAGGA CATTCAGGCC GCCGGCCTGC TGCCGCGCGA GCGGAACGTC
CTGGAGATCG TCACCGGCAA GGACGCGCCC ACCGCCACCG GCGTCTATGT CGGCGGCTGG
CAGGACAAGG ACGGCAATTT CTTCTACCTG CGACACAGCG GCCCCGAGCA CGTGCTGACC
TACGCCCCGA CCCGAAGCGG CAAGGGCGTC GGCCTGGTGG TGCCGACCCT GCTTTCGTGG
GGCGCAAGCA GCGTCATCAC CGACTTGAAG GGCGAGTTGT GGGCACTGAC CGCCGGCTGG
AGGCAGAAGC ACGCCAAGAA CAAGGTGCTG CGCTTCGAGC CGGCCAGCAG CTCGGGCGGC
GTGTGCTGGA ACCCGCTGGA TGAAATCCGC GTCGGCACCG AGGCCGAAGT CGGCGACGTG
CAGAACCTAG CAACTCTGAT AGTTGACCCG GACGGCAAGG GCCTGGATTC GCACTGGCAA
AAGACCGCCT TCGCGCTCCT GGTCGGCGTC ATCCTGCACG CGCTCTACAA GGCCAGGAAC
GAGGGCGGCA CGGCCACGCT GCCATCGGTC GATGCCATGC TGGCCGACCC GAACCGGGAC
ATTGGCGAGC TATGGATGGA AATGACCACC TACGGGCACG TGGACGGTCA GAACCACCAC
GCCATCGGAT CGGCGGCCCG CGACATGATG GATCGGCCCG AAGAGGAAGC GGGATCGGTG
CTGTCCACGG CCAAATCCTA TCTGGCCCTG TACCGCGATC CCGTGGTGGC GCGCAACGTG
AGCCGGTCGG ACTTCCGCAT CAAAGACCTG ATGCACTCCG ACGACCCGGT GAGCCTGTAC
ATCGTCACCC AGCCCAACGA CAAGGCCCGC CTGCGGCCGC TGGTGCGCGT CATGGTGAAC
ATGATCGTGC GCCTGCTGGC CGACAAGATG GACTTCGAGA ACGGCCGGCC GGTGGCCCAC
TACAAGCACC GCCTGCTGAT GATGCTGGAC GAGTTCCCGA GCCTCGGGAA GCTGGAGATC
ATGCAAGAGT CGCTGGCCTT CGTCGCCGGC TACGGCATCA AGTGCTACCT GATTTGCCAG
GACATTAACC AGCTCCGCAG CCGCGAGACG GGCTACGGCC ACGACGAAAG CATCACGTCG
AACTGCCACG TGCAGAACGC CTACCCGCCC AACCGCGTCG AGACAGCCGA ACACCTGTCC
CGACTGACCG GGCAGACCAC CGTGGTGAAG GAGCAGATCA CGACCAGCGG CCGCCGCACG
GCGGCCATGC TGGGCCAGGT GTCGCGCACC TACCAGGAAG TGCAGCGCCC CTTGCTGACG
CCCGATGAGT GCCTGCGGAT GCCGGGGCCA AAGAAGAACG ACAAGGGCGA GATCGAGGAA
GCCGGCGACA TGGTGATCTA CGTCGCCGGC TACCCGGCCA TCTACGGCAA GCAGCCGCTG
TACTTCAAAG ACCCGGTGTT TCAGGCGCGG GCCGCGATCC CCGCGCCGAA GGCCACCGAC
CGGCTGCGTC AGGTTGTCGA GGCAGGGGAG GGCATCACGA TATGA
|
|---|
| Protein sequence | MKIKMNNAVG PQVRSAKAKT PKLLPILGGV SLVGGLQAAT QFFAYTFQYH ASLGANLGHV
YAPWSILNWS AKWYSQYPDE IMRAGSIGMV TATVGLLGVA VAKVVTSNSS KANEYLHGSA
RWAEKKDIQA AGLLPRERNV LEIVTGKDAP TATGVYVGGW QDKDGNFFYL RHSGPEHVLT
YAPTRSGKGV GLVVPTLLSW GASSVITDLK GELWALTAGW RQKHAKNKVL RFEPASSSGG
VCWNPLDEIR VGTEAEVGDV QNLATLIVDP DGKGLDSHWQ KTAFALLVGV ILHALYKARN
EGGTATLPSV DAMLADPNRD IGELWMEMTT YGHVDGQNHH AIGSAARDMM DRPEEEAGSV
LSTAKSYLAL YRDPVVARNV SRSDFRIKDL MHSDDPVSLY IVTQPNDKAR LRPLVRVMVN
MIVRLLADKM DFENGRPVAH YKHRLLMMLD EFPSLGKLEI MQESLAFVAG YGIKCYLICQ
DINQLRSRET GYGHDESITS NCHVQNAYPP NRVETAEHLS RLTGQTTVVK EQITTSGRRT
AAMLGQVSRT YQEVQRPLLT PDECLRMPGP KKNDKGEIEE AGDMVIYVAG YPAIYGKQPL
YFKDPVFQAR AAIPAPKATD RLRQVVEAGE GITI
|
|---|
| |