| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4271 |
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| Symbol | |
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| ID | 4670491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008766 |
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| Strand | - |
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| Start bp | 19512 |
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| End bp | 22070 |
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| Gene Length | 2559 bp |
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| Protein Length | 852 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639826943 |
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| Product | conjugal transfer protein TrbE |
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| Protein accession | YP_974105 |
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| Protein GI | 121582576 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000528773 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.467859 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGAAG CAATCGCAAT TGCCATTGCT GTGCTCGGTG CGGTTCTGTT GCTCATCCTC
TTTGCCCGCA TCCGGGCCGT CGATGCCGAG CTGAAGCTCA AGAAGCATCG CGCCAAGGAT
GCCGGCCTGG CCGATCTGCT CAATTACGCC GCCGTGGTCG ATGACGGCGT GATCGTGGGT
AAGAACGGCT CCTTCATGGC CGCATGGCTG TACAAGGGGG ATGACAACGC CAGCAGCACC
GAGGAACAGC GGGAAATGGT GTCGTTCCGC ATCAACCAGG CCCTGGCGGG CCTGGGGAAC
GGCTGGATGG TGCATGTCGA TGCTGTGCGT CGGCCTGCGC CGAACTACTC GGAGCGCGGC
GTCTCGTCGT TCCCCGACTC TGTGTCCTCG GCCATTGACG AGGAACGCCG GCGCTTGTTC
GAGGGCCTGG GCGCGATGTT CGAGGGCTAC TTTGTCCTGA CCGTCACGTG GTTCCCGCCG
GTGCTGGCCC AGCGCAAGTT TGTCGAACTC ATGTTCGATG ACGATGCGGT GGCTCCCGAC
CATACGGCGC GCACCACGGG CCTTATCGCG CAGTTCAAGC GCGAGATCAC CAGCCTGGAA
TCTCGCCTGT CCTCGGCGGT CAAGCTGACG CGCCTGCGCG GCCAGAAGGT CGTCTCGGAA
GAGGGCAGGG AGGTCACGCA CGATGACTTC CTGAGCTGGT TGCAGTTCTG CGTGACGGGC
CTGCATCACC CGGTCATGCT GCCCAGCAAT CCGATGTACC TCGATGCGGT CATCGGCGGG
CAAGAGCTGT GGGGCGGCGT GGTGCCCAAG ATCGGGCGCA AGTTCATCCA GGTGGTCGCC
ATCGAAGGCT TCCCCTTGGA GTCAACGCCT GGGGTGCTCT CGGCCCTGGC CGAGCTGCCC
AGCGAATACC GCTGGTCGAG CCGCTTCATC TTCATGGATC AGCACGAGTC CTTGAAGCAC
CTGGACAAGT TCCGCAAGAA GTGGAAGCAG AAGATTCGCG GCTTCTTCGA TCAGGTGTTC
AACACGAATA CCGGCTCCAT CAACCAGGAC GCGGCCGCGA TGGTCGGCGA CGCCGAGGCG
GCCATCGCCG AGGTCAACAG CGGCTTGGTG GCGGCCGGCT ACTACACCAG CGTGGTCGTG
CTGATGGACG AGGATCGGGA GCGCCTGGCG GCCTCCGCGC TCCTGGTCGA GAAGGCAGTC
AACCGCCTGG CCTTCGCGGC CCGTATCGAG ACGATCAACA CGCTCGATGC GTACCTGGGC
AGCTTGCCCG GCCACGGTGT CGAGAACGTG CGTCGGCCGC TCATCAACAC GATGAACCTG
GCCGACCTGC TGCCGACAAG CTCGATCTGG ACGGGCAGCG CCACGGCTCC GTGCCCGATG
TACCCGCCGC TGTCGCCGGC GCTCATGCAC TGCGTGACGG TGGGCGCTAC GCCGTTCCGC
CTGAACCTGC ACGTGCGCGA CCTGGGCCAC ACCTTCATGT TCGGCCCGAC CGGCGCGGGC
AAATCGACGC ACCTGGGGAT CATCGCCGCG CAGCTCCGTC GCTACGCCGG CATGTCGATC
TACGCCTTCG ACAAGGGCAT GTCGATGTAC CCGCTCGCGG CCGGCATTCG TGCGGCCACG
AAGGGCAAGA GCGGCCTGCA CTTCACGGTG GCCGCCGACG ATGACCGGCT GGCCTTCTGC
CCGCTCCAGT TCCTCGAAAC GAAGGGGGAT CGGGCCTGGG CGATGGAATG GATCGACACC
ATCCTGACGT TGAACGGTGT CAACACCACG CCGGCGCAGC GCAACGAGAT CGGCAACGCG
ATCATGAGCA TGCACGCCAG CGGCGCGCGA ACGCTCTCCG AGTTCTCGGT GACGATCCAG
GACGCGGCGA TCCGCGAGGC GATCAGGCAG TACACGGTGG ACGGCTCGAT GGGCCACTTG
CTCGATGCCG AAGAGGACGG CCTGTCGCTG TCCGACTTCA CGGTGTTCGA GATCGAAGAG
CTGATGAACC TGGGCGAGAA GTTCGCGCTC CCGGTGCTGC TCTACCTGTT CCGCCGCATC
GAGCGCGCAC TGAAAGGCCA GCCCTCCGTC ATCATCCTGG ACGAAGCCTG GTTGATGCTG
GGCCACCCGG CGTTCCGCGC CAAGATCAGG GAATGGCTCA AGGTGCTGCG CAAGGCCAAC
TGCCTTGTGC TGATGGCTAC GCAAAGCCTT TCGGACGCGG CCAACTCGGG CATCTTGGAC
GTGATCGTGG AATCGACCGC GACCAAGATT TTCCTGCCCA ACGTCTACGC CAGGGACGAG
GACACCTCGG CGCTCTATCG CCGCATGGGC CTCAACGCGC GGCAGATCGA AATCCTGGCG
ACCGCCATTC CGAAGCGTCA GTACTACTAC GTGTCGGAGA ACGGCCGCCG TCTCTATGAC
CTTGCCCTGG GGCCGATGGC CCTGGCCTTC GTCGGCGCGT CCGACAAGGA ATCGGTCGCC
ACCATCAAGA GCCTCGAAGC CAAGTTCGGC CACGAATGGG TGCATGAGTG GCTGGCCGGC
CGTGGGCTGA ATCTCAACGA CTACCTGGAG GCCGCATGA
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| Protein sequence | MIEAIAIAIA VLGAVLLLIL FARIRAVDAE LKLKKHRAKD AGLADLLNYA AVVDDGVIVG
KNGSFMAAWL YKGDDNASST EEQREMVSFR INQALAGLGN GWMVHVDAVR RPAPNYSERG
VSSFPDSVSS AIDEERRRLF EGLGAMFEGY FVLTVTWFPP VLAQRKFVEL MFDDDAVAPD
HTARTTGLIA QFKREITSLE SRLSSAVKLT RLRGQKVVSE EGREVTHDDF LSWLQFCVTG
LHHPVMLPSN PMYLDAVIGG QELWGGVVPK IGRKFIQVVA IEGFPLESTP GVLSALAELP
SEYRWSSRFI FMDQHESLKH LDKFRKKWKQ KIRGFFDQVF NTNTGSINQD AAAMVGDAEA
AIAEVNSGLV AAGYYTSVVV LMDEDRERLA ASALLVEKAV NRLAFAARIE TINTLDAYLG
SLPGHGVENV RRPLINTMNL ADLLPTSSIW TGSATAPCPM YPPLSPALMH CVTVGATPFR
LNLHVRDLGH TFMFGPTGAG KSTHLGIIAA QLRRYAGMSI YAFDKGMSMY PLAAGIRAAT
KGKSGLHFTV AADDDRLAFC PLQFLETKGD RAWAMEWIDT ILTLNGVNTT PAQRNEIGNA
IMSMHASGAR TLSEFSVTIQ DAAIREAIRQ YTVDGSMGHL LDAEEDGLSL SDFTVFEIEE
LMNLGEKFAL PVLLYLFRRI ERALKGQPSV IILDEAWLML GHPAFRAKIR EWLKVLRKAN
CLVLMATQSL SDAANSGILD VIVESTATKI FLPNVYARDE DTSALYRRMG LNARQIEILA
TAIPKRQYYY VSENGRRLYD LALGPMALAF VGASDKESVA TIKSLEAKFG HEWVHEWLAG
RGLNLNDYLE AA
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