| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_4270 |
|---|
| Symbol | |
|---|
| ID | 4670487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008766 |
|---|
| Strand | - |
|---|
| Start bp | 18733 |
|---|
| End bp | 19515 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639826942 |
|---|
| Product | conjugal transfer protein TrbF |
|---|
| Protein accession | YP_974104 |
|---|
| Protein GI | 121582575 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 0.117817 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0324718 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCG CCGACACCCT CAAGGGCTTG ATCTTCAAGA AGCCCGCCAA CCCCTCCGAG
CCGCGCGATC CGCGCCGCTC GAAGGAACCG CTCGCCGGCG GTCGCCGCTC GGGCGAGGCC
GAGAACCCCT ACCTGGCCGC GCGTCGCACC TGGAACGATC ACGTGGGCGG CGTCGTCTCG
CAGCGCCAGA CCTGGCAGGT GATCGGCATC CTGTCGCTGT TGATCGCGCT GGCCGGCGTT
GGCGGCGTGA TCCACATCGG CAGCCAGTCG AAGTTCATCC CCTACGTGGT CGAGGTGGAC
AAGCTGGGCC AGACCGTGGC CGCCGGCCCG GTGCAGGCCG CCGGGAAGGC CGATCCGCGC
GTCATCCATG CCGCTGTCGC GGACTGGATG AGCTGCGCGC GCATGGTGTC GCCTGACGTG
GCTATGCAGC GCAAGTGCGT GTTCAAGGCG TACTCGATGC TCGCCCCGAA CGATCCGGCG
ACGCCAAAGA TGAATGAGTG GCTGAACGGC ACGCCCGACT CCAGCCCGTT CAAGCGCGCC
GAGAAGGAAA TGGTCAGCGT CGAGATCAAG ACCGTCATCC CGCAGACGCC CGACACCTGG
CAAGTCGAGT GGGTGGAAAC CACCCGCGAC CGCCAAGGCA CGCTGAAAGG CCAGCCCGTC
ACCTGGCGCG CGCTCGTGAC TACCTACATC GCCGAGGTCA CGCCCAACAC CACCGATGAG
CAACTGAGGA ACAACCCGTT GAGCATCTAC GTGCGTGATT ACTCCTGGTC CCGCATCCAA
TGA
|
|---|
| Protein sequence | MSIADTLKGL IFKKPANPSE PRDPRRSKEP LAGGRRSGEA ENPYLAARRT WNDHVGGVVS
QRQTWQVIGI LSLLIALAGV GGVIHIGSQS KFIPYVVEVD KLGQTVAAGP VQAAGKADPR
VIHAAVADWM SCARMVSPDV AMQRKCVFKA YSMLAPNDPA TPKMNEWLNG TPDSSPFKRA
EKEMVSVEIK TVIPQTPDTW QVEWVETTRD RQGTLKGQPV TWRALVTTYI AEVTPNTTDE
QLRNNPLSIY VRDYSWSRIQ
|
|---|
| |