Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_4264 |
Symbol | |
ID | 4670477 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008766 |
Strand | - |
Start bp | 13139 |
End bp | 14872 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639826936 |
Product | TrbL/VirB6 plasmid conjugal transfer protein |
Protein accession | YP_974098 |
Protein GI | 121582569 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3846] Type IV secretory pathway, TrbL components |
TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.121202 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00233607 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGAATGC CAGCCAATCT AAAAACCCTC GCCCTGCCGC TGTTCGTCTG GCTGGCGTTC TTCGCGGTCG ATGCCCACGC GGCCATCGAC AACGCCGGCG TGTTCGATAG CGTGCTGGAT CGCTACCAGG CCGCCGCGAG CGGCTGGGCC GGTGTCATCA CCACGGCCGC AACCTGGCTC TTCTGGACGC TGGTTGTGAT CTCGATGGTC TGGACGTTCG GCATGATGGC CTTGCGCAAG GCCGACATTG GCGAGTTCTT CGCGGAGTTC GTCCGCTTCA CGATCTTTAC CGGCTTCTTC TGGTGGGCGC TGACCAACGG CCCTAACTTC GCATCGTCCA TCTATGCGTC GTTGCGGCAG CTCGCCGGCA ACGCGACGGG CCTGGGCAAT GCGCTATCGC CCTCGGGCAT CGTGGACGTG GGCTTTGCGA TCTTCGACAA GGTGATGGAT CAGTCCTCGG TGTGGTCGCC GGTGGACAGC ATGGCCGGCA TCCTCATGGC CGTGGCGATC CTGGTCATCC TGGCCCTGGT CGGCGTCAAC ATGCTCCTGC TGCTCGCGTC GGGCTGGGTG CTGGCCTACG GCGGCGTGTT CTTCCTCGGC TTCGGTGGTT CGCGTTGGAC TTCCGACATG GCGATCAACT ACTACAAGGT CGTCCTGGGC GTGGCCGCGC AGCTCTTCGC AATGGTGCTC CTGGTGGGCA TCGGCAAGAC CTTCCTCGAT GACTACTACG CGCGCATGAG CGCCGGCATC AGCCTCAAGG AAATGGGCGT GATGCTGATC GTCGTCATCA TCCTTCTGGC GTTGACCAAC AAGATTCCGC CGCTCATCGC CGGGATCATC ACCGGCGCGA GCGTGGGCGG TGCCGGCATC GGTCAGTTCG GTGCAGGCGC TGCGCTGGGT GCCGCAGGCA TGGCAGCAGC AGCGGCCGCC ACTGGCGGCG CAGCTCTGGC CGCCGGCGCG GCCTCGGCCG CCGGCGGTGC CTCGGCCGTC ATGGCCGCCT TCTCGAAGGC CAATGAGAAC GTGTCGGCAG GCACGGACGT GATGTCGGCC TTCTCTGGTG GCGGCAGCTC GGGCGGTGGT TCAGGCGGTG GCGGTGGCGA CGCCGGCACC GGCGGCACGC CCTTCGCGCA GGCTGCGGGC TTTAGCGGCG GCTCCGGTGG CGGCTCGTCG TCGGGTGGCG GTAGCACCTC GACCGGCAGC AGCTCGGGCA GCTCGAAGGG TGGCGAGAAG GGCGGCGACA AGGCCGGCGC CGGCGGCCAG GGCAGCGGCT CGACCGCCAG CACCGGCAAC GGTGCGGACA AGGCCGCCAA GAACGAACCC AAGCCCGCCG GCGGGGCAGG GCAGGGGCAG CAGGGCGGCC AGCAGGCCGC GCCGGGCAGC ACCGGCCCCG GCTTGCTCGC GTCGGCCGCC TCGGCGCTCG GCACGGCCGG CCGCATCGCG GCCGACGCCG GCGCGAACTT GGCGAAGGGA ACCGCCGATG TTGCCAAGGC CAAGGCCGCG AGCCTGCGCG AAGCCGCAGC CGAACGGATC GCCGACACCA CCGGCGGAAA GATCGCCGCC GCGATCAAGG CGCAAGGAAG CGGCACGGCC GAGAACATCG ACGTGCCCGA CCAGCAGCCC GCGCCGAGCT TCGGCGACAA CAGCCTGGCA GGCGGCCCAG CCGATGCCGA TCCCGAGTCC GAAGTAGCCG CGTTCGCCAA CCGCGAGCAA GGCCGCGACG GCACAACTGC GTAA
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Protein sequence | MRMPANLKTL ALPLFVWLAF FAVDAHAAID NAGVFDSVLD RYQAAASGWA GVITTAATWL FWTLVVISMV WTFGMMALRK ADIGEFFAEF VRFTIFTGFF WWALTNGPNF ASSIYASLRQ LAGNATGLGN ALSPSGIVDV GFAIFDKVMD QSSVWSPVDS MAGILMAVAI LVILALVGVN MLLLLASGWV LAYGGVFFLG FGGSRWTSDM AINYYKVVLG VAAQLFAMVL LVGIGKTFLD DYYARMSAGI SLKEMGVMLI VVIILLALTN KIPPLIAGII TGASVGGAGI GQFGAGAALG AAGMAAAAAA TGGAALAAGA ASAAGGASAV MAAFSKANEN VSAGTDVMSA FSGGGSSGGG SGGGGGDAGT GGTPFAQAAG FSGGSGGGSS SGGGSTSTGS SSGSSKGGEK GGDKAGAGGQ GSGSTASTGN GADKAAKNEP KPAGGAGQGQ QGGQQAAPGS TGPGLLASAA SALGTAGRIA ADAGANLAKG TADVAKAKAA SLREAAAERI ADTTGGKIAA AIKAQGSGTA ENIDVPDQQP APSFGDNSLA GGPADADPES EVAAFANREQ GRDGTTA
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