Gene Ajs_4264 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_4264 
Symbol 
ID4670477 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008766 
Strand
Start bp13139 
End bp14872 
Gene Length1734 bp 
Protein Length577 aa 
Translation table11 
GC content69% 
IMG OID639826936 
ProductTrbL/VirB6 plasmid conjugal transfer protein 
Protein accessionYP_974098 
Protein GI121582569 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3846] Type IV secretory pathway, TrbL components 
TIGRFAM ID[TIGR02783] P-type conjugative transfer protein TrbL 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.121202 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00233607 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGAATGC CAGCCAATCT AAAAACCCTC GCCCTGCCGC TGTTCGTCTG GCTGGCGTTC 
TTCGCGGTCG ATGCCCACGC GGCCATCGAC AACGCCGGCG TGTTCGATAG CGTGCTGGAT
CGCTACCAGG CCGCCGCGAG CGGCTGGGCC GGTGTCATCA CCACGGCCGC AACCTGGCTC
TTCTGGACGC TGGTTGTGAT CTCGATGGTC TGGACGTTCG GCATGATGGC CTTGCGCAAG
GCCGACATTG GCGAGTTCTT CGCGGAGTTC GTCCGCTTCA CGATCTTTAC CGGCTTCTTC
TGGTGGGCGC TGACCAACGG CCCTAACTTC GCATCGTCCA TCTATGCGTC GTTGCGGCAG
CTCGCCGGCA ACGCGACGGG CCTGGGCAAT GCGCTATCGC CCTCGGGCAT CGTGGACGTG
GGCTTTGCGA TCTTCGACAA GGTGATGGAT CAGTCCTCGG TGTGGTCGCC GGTGGACAGC
ATGGCCGGCA TCCTCATGGC CGTGGCGATC CTGGTCATCC TGGCCCTGGT CGGCGTCAAC
ATGCTCCTGC TGCTCGCGTC GGGCTGGGTG CTGGCCTACG GCGGCGTGTT CTTCCTCGGC
TTCGGTGGTT CGCGTTGGAC TTCCGACATG GCGATCAACT ACTACAAGGT CGTCCTGGGC
GTGGCCGCGC AGCTCTTCGC AATGGTGCTC CTGGTGGGCA TCGGCAAGAC CTTCCTCGAT
GACTACTACG CGCGCATGAG CGCCGGCATC AGCCTCAAGG AAATGGGCGT GATGCTGATC
GTCGTCATCA TCCTTCTGGC GTTGACCAAC AAGATTCCGC CGCTCATCGC CGGGATCATC
ACCGGCGCGA GCGTGGGCGG TGCCGGCATC GGTCAGTTCG GTGCAGGCGC TGCGCTGGGT
GCCGCAGGCA TGGCAGCAGC AGCGGCCGCC ACTGGCGGCG CAGCTCTGGC CGCCGGCGCG
GCCTCGGCCG CCGGCGGTGC CTCGGCCGTC ATGGCCGCCT TCTCGAAGGC CAATGAGAAC
GTGTCGGCAG GCACGGACGT GATGTCGGCC TTCTCTGGTG GCGGCAGCTC GGGCGGTGGT
TCAGGCGGTG GCGGTGGCGA CGCCGGCACC GGCGGCACGC CCTTCGCGCA GGCTGCGGGC
TTTAGCGGCG GCTCCGGTGG CGGCTCGTCG TCGGGTGGCG GTAGCACCTC GACCGGCAGC
AGCTCGGGCA GCTCGAAGGG TGGCGAGAAG GGCGGCGACA AGGCCGGCGC CGGCGGCCAG
GGCAGCGGCT CGACCGCCAG CACCGGCAAC GGTGCGGACA AGGCCGCCAA GAACGAACCC
AAGCCCGCCG GCGGGGCAGG GCAGGGGCAG CAGGGCGGCC AGCAGGCCGC GCCGGGCAGC
ACCGGCCCCG GCTTGCTCGC GTCGGCCGCC TCGGCGCTCG GCACGGCCGG CCGCATCGCG
GCCGACGCCG GCGCGAACTT GGCGAAGGGA ACCGCCGATG TTGCCAAGGC CAAGGCCGCG
AGCCTGCGCG AAGCCGCAGC CGAACGGATC GCCGACACCA CCGGCGGAAA GATCGCCGCC
GCGATCAAGG CGCAAGGAAG CGGCACGGCC GAGAACATCG ACGTGCCCGA CCAGCAGCCC
GCGCCGAGCT TCGGCGACAA CAGCCTGGCA GGCGGCCCAG CCGATGCCGA TCCCGAGTCC
GAAGTAGCCG CGTTCGCCAA CCGCGAGCAA GGCCGCGACG GCACAACTGC GTAA
 
Protein sequence
MRMPANLKTL ALPLFVWLAF FAVDAHAAID NAGVFDSVLD RYQAAASGWA GVITTAATWL 
FWTLVVISMV WTFGMMALRK ADIGEFFAEF VRFTIFTGFF WWALTNGPNF ASSIYASLRQ
LAGNATGLGN ALSPSGIVDV GFAIFDKVMD QSSVWSPVDS MAGILMAVAI LVILALVGVN
MLLLLASGWV LAYGGVFFLG FGGSRWTSDM AINYYKVVLG VAAQLFAMVL LVGIGKTFLD
DYYARMSAGI SLKEMGVMLI VVIILLALTN KIPPLIAGII TGASVGGAGI GQFGAGAALG
AAGMAAAAAA TGGAALAAGA ASAAGGASAV MAAFSKANEN VSAGTDVMSA FSGGGSSGGG
SGGGGGDAGT GGTPFAQAAG FSGGSGGGSS SGGGSTSTGS SSGSSKGGEK GGDKAGAGGQ
GSGSTASTGN GADKAAKNEP KPAGGAGQGQ QGGQQAAPGS TGPGLLASAA SALGTAGRIA
ADAGANLAKG TADVAKAKAA SLREAAAERI ADTTGGKIAA AIKAQGSGTA ENIDVPDQQP
APSFGDNSLA GGPADADPES EVAAFANREQ GRDGTTA