| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4800 |
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| Symbol | |
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| ID | 4685992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008761 |
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| Strand | + |
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| Start bp | 41897 |
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| End bp | 49429 |
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| Gene Length | 7533 bp |
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| Protein Length | 2510 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639826789 |
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| Product | zinc finger, CHC2-family protein |
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| Protein accession | YP_973951 |
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| Protein GI | 121583525 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0358] DNA primase (bacterial type) |
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| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 85 |
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| Fosmid unclonability p-value | 0.0650684 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATCGAT ACGACATTGG CGACTTGCTG GCAAAAGTTC CACTCGAAGA AGTAGTTACA
CGACTGGGGA TTGAGACCGA GCGACGCGGC GGAGTAACTC GGGCGCTCTG CCCGTTTCAC
CAAGACACGC GACCGTCGCT GAATCTCTAT TCGGCAGACG GGAATTCGCC TGCTCACTAT
CACTGCTTCG CCTGCGGAGC CCATGGCATC GCCATTGACT TGGTCAAGCA GGTTGAGGGA
CTGGAGTTTC TGCCGGCCGT TCAATGGCTA GCCCGGCAGT TCAGCATCAG ACCAATACGT
AACCAGGCAT CGCGGCGCGC CGGGCGCGCG GGTGCAAGCG AAACGGCTCA GGAGTTCGCG
CAGCGCATTT TTAACGCGCG GCACGACGTA GAGCAGTTCC AAAGCTGGTG CGACGAGCGC
GGTTTCGATC CCGCGTTTTT GCATGGCCAG GGCCTACGCT GCATCACCCG CGGCGTGTTG
GTCGAGAGTT TGCAAGCAGA GCCAGTGGGC GAGCGCGCCG GATTGATTGA CGAACTTCAA
AGTCTGGGTC TGATCAAGCG TTTGCGCTCG TATTCCCCGG CCGCGCAAGG CAAGCTAGAC
CTGCTCGACC AGTTCCAGGA CTGCTTTCAT GACGGCCGCG TCGTCATTCC GATCCGCCGT
GGTGAGGCCA AGCGGACCGA GGTGGTCGGA TTTGCTGGAC GCGCCTTGCA GAGCGCTCCA
CCCGAGGGCG TGCCCAAGTA CCTACTCACG CCGGGCTTCG AGAAGTCTGA GTACCTTTTC
AACGAGCCCG AAGCATTCAG GGCTGTTGCT CAGGCGTTGA AGAACAACGA GTCAGCAAGA
CTCTATCTGG TGGAGGGCTT CCTGGATGCG CTACGGCTGC AGTCCCTGGG ACAACCGGCT
GTCGCGCTGA TGGGTATCAG CCTCGGCAAG GGGCAGTTCG AGCGACTGAC GAAGCTCTCA
CAGAAGATGC CAGGAACGGC CCCCCTCGCG TACTGCATCT TTCTCGACAA CGACCCCGCC
GGTTTTGGCG GCGCAGATCG TTTGGCGCGC GGATTGCTCG GTCTTACGGG CGTGGACATG
CGCTGGGTGG GCATGCCCTG GCGTACAGAG CCCTCACTGG GCAAGGATCC CGACTCCAGT
CTGCGTGGCT TGAGCACGCC GGAAGAGGCC GCTGCCTGGT TGAAGCGCTA CGACCTGCCT
GCTGAGGCGG TTCTGCTCGC GTCAGCCCTG GGAAGTCAAG ATGCCTCCGA GCTTCAATTG
CCACGCTGGG ACAAGCTGGC CGCGACCGCG CGCGAACGGG CTTTGTTCCG GACAGTTCTG
GCTGTCAGCA AGCTGCACGG CCGTCGCTCG CCAGATAGCG TTGCGGCGCG CCTCAAAGAA
AGCGCTTGGG TCTGGGCCCA AGAGCTGCAC GCCATGATGG GGGACCCTGG CGGCAGTGCG
CGTCCCAACA GTCGCGGCAT GTATCTCGAT GAAAGCTATC CGCGCGCTGC ATTGGCGCGC
GCCTTGGCTT ACCACGGCTC GCGCCGGGGC GAACTGCCCT CCGATGACGA GGCATGGCAA
ACCTTGAGTG GCAACGAGCG CTTGTTCGAT CAGACGGCCT TCGCGCGGCT TCGAGCCACG
GTCGCCGATG CGAAGCCGTG GCGCCAAGCC GCACTACTCG ATGCCGTACA ACTACCTCGT
AAGTTCACGG CTGATCCGAA GGTACTGGGA GATCCCCGTC TCAAGGTCAT GCCGCATCCG
GCCGATCTGC ACGTGCAGCA GCTCCTGCTC AACGAACTGT TGACGCAGCG GCATGACCGC
CTGGCCGCCA GCGGCGGTGT CTTCTCGGAT GGCATTCCCG CAGTGCGTTG GTATGCCTCG
CGGCAAGCGG TGGAGGTAAC CGGACCGTTT GACTTACTCA ATGAGCCCGA CATCGAACGC
GACGAGCCCG AGACCTTGAG CTTCGGCTAT CAGGTTGACA TGGACGTCTT GGAAGGGGAC
AAAACCCCGT CAGATCAAGG CATGTTCCGG CCGTTTGGAC AATGCTGGCG CGCGTTCATG
GCATGCCTGA CCGACCAGTG CCATGCTATT GGACCGCGTG TGCACGTATT GCGCCTTGAT
GCCAAGCGCT ATTACGACTC GATCCAACGC TATTTGGTGC GGGATGCTTT GCTGACGCCG
TTGAAAAGTG CATTGACCAC GCACGGCGTG CCAGAAGGGT TCCGGGCCAT ATTCGGCTTT
CACGATGCAG ATGCGCCGAA CTGGGACGCT GCACTGGAAC GGTTGGTGAG CGGATTGGTA
TTCGAATACG AGTACCGAGA TCCTGGGGCG GTAGGGGCAC CTCGACAAAG TGATGCGGTC
ATGGGCATTG CGCAAGGGCC CGTGTTGTCA GCCTACCTTG GGACGATTGC ATTGTTTCCG
GTGGACGAGG TCGCCCGGAG GTTCATGCGC GACACGGCGG AAAGATTGCC TGACGGGCAG
TGGCGACAGC GTGCGGGCTA CGCACGCTAT GTCGACGATA TCGTGCTGTT CGCCGACAGC
CAGGAATTGC TAAAGAAGCT ACGTGAAGTT CTACAGGCCA AGTCTTCAGA ACTTTCCATC
GATTTGATCC ACAAGGGTGA CCGGGTTCGG GCGGGCTCTC CGGACCAAGT CATGCGCCAA
CTCAACGAAG GGCGCGGCCT CGCGGCATCT GTGCCAGCCT GGGAGACGCC CATTGTGGGC
GACGGCGACT CGGATTGGAG CCTGGGCGAC GACATGCCCC AAGTGGACCG GCAATGCGCC
TTGCAGTTGC TGCGACACCC GGGCCTCATC GGTGACCCCA TGCTCATTGC AACGCAGGTG
AAGACGGCGA TCTCAGCCCC CGATCTTCGC CCCAATGACC TGGGCCTGTG TGCCCGCTTG
TTATGGTGGC AAGTCGCCGC AACGGAACTG TGGCCCGATG GAAAAGCCGC TTGGCACTGC
TTTGAAGGCC TGTGGAACGA AGCATGCGCG GGCCAGCCAT GGGTCGACGC CTTCAAGCAG
CGCGGCTACG ACTTGCTTTA CGCCGTGGAA GGCCTGGACA AGTTGATGGA TCCCAATCCG
TGGCAAGCCA ACGGGCTGCT GCTAAAGGAG CGCGATGAAC ACCGCGCCAA GCGCGTGCAT
CTGGCTGGCC TCGTTTGCAA GCCAAGCTTC TTCGTCGACG TGAGACCCGC CGAAAACCTC
GAGCATGTGC GAAGGCGCGC TCGCCTGGTA GCGCGAAAGG CTCGGAGGCT TGCACACGCC
GGCGCAGCGC TCGTGCCGCC AGATGTGCAC GAGGAAGAAC GCCTTACGGC CATTGAATGG
CTGTGTCAGG CAAGCCAAAC CATCGCAGCG AACTCAGACC AACATCCCGT TGCGGCACTA
CGAGACCGTC AACCGGCTCG GATACCCGGT GATGACCTGG CGCATGCGGT CATTGAGCAG
TTGAAAGGCA CGCACCTCCT GTCGAAAACC AAGGAGCAGG ATTTCGCACC CTCAGTGCCG
ACCCACGGGG TTTCGGCTAT CGCATTGGCG ATCGACTTCA TCCTTGACAG TTCGCCAAAG
AGGACTGGCT TGCAACGGCT CGCTCAGCAG TTCCCGGGGC TACTTTCCGG GAGAGACGTC
AACGGTAGAC AGCTGATCTC GAATTTGCCG ATCACCGGCG AACTCAGCTC GCTCTATGCC
ATAGACCCTG AGCAGGCAGC CGATGGCACA GGCAGACATC TGTACCGTTA CTCCGAGCGT
GGCGCGTCAA CGAGGGCGCC TACTAGCGTC GATCTCGTCC AAGTGACATC GACCACTGAG
CTGCAATACG CATCCGAGGT CCAGTCGTAT CGCTTTGTGG AAAGCGCGTC CGACGCCGTT
CGGCTTGTCG TCGACGTAAG TGAGGGTGCG CAACGCTGGG ATGATCTTTG CGCACTGGGT
ACGACTGAGG TGGATGAACC CATCACCCAA AAAGCGGTGC GCTTGTTCTA CGCCCTACTG
TCCATACACC AATACGCGGC CGGAGAGGAC AGCAAGGATG CCTACGTCCC CTTCAGACCG
CAGCTGTTCA GTCAGGGGAA AGCGCTCACA TCAACTCTGC ATCTGCTTGC TGATCGCGTC
CCTAGAAAGT TGCTAGGCGC AAGCGCTTGG TACCACGACC AAGATGATCG GGTCGCATCT
GTGATGGTGC CCAAGGAGCG TGCAGATCTA TGGCGCGTGG GCTGGGCCGT GGCTGATGTG
TTGGGTGTGG CTGCCGACAT GTCGGGCGAG ACGGGCGAGC GCGACGAGCA ACTGGACGAC
CTTGGCGAAT CGCACGGTGA TCAGAGCGCC ACCGAATCAT TTGCGGCGCG CGCCAAAAAG
GAACTGGAGG GTTACGTTCT GCGTCAACAG CTTCGCAAGC TGCAAGGCGC TTATCTTTCT
GAGGCACAGA TCGAGACGGA AACGGTGACC TCGCGCGATT TGCCGTCAAC GGTGCGCCGG
GCGCTAAAGT TGCTGCGCAC CTATCCATCA GACCAGAACT TGCACGCTCA GGTGCGGCAT
TTGCTGCTGA TTGAGGCCGA GAGCCGCGCT ATGGCCCTGC GTCTGCAAAG ACGTAGCGCC
GATGACTTGC GTCACGCGCT GCACCGGGTG TTTCCGGATG TGCTGGCGCG ATTGCCGCTC
TGGTCATTGC AAGGGCTGGA ACTGGAGCGT CCGGCGGAAC ATGAGAAACC TTTGCGGCCC
GAGCTGGCAC TGATGGTTTC GCTGTACCGT GCAATGTATC CGGCTTCCGC TTCGGCATCG
GCCGACGAGG TCGACAAAGA CTCGTTCCTT CGCGTGGCGC TTGCGCTCGC GGCTGTCGGT
GTCGGTCTGC GTGGCTGCGT GGCTTCACTT TGGGGGGCGT CGGTCGCCTC AGGTTCGCAC
CCCATGGCAG AGCACCTCAA CGTGCCGGCC AGTTGGGCCA TGCCAGACGC GGTCCGCCTT
GATCCGCAAG GCGACTACCA GGCTATGCGA AAGAGGTTGC TTGACGGCGA TTGGGCTGCA
CTTTGCAAAG CCAGTCCATG GCAGTGGATG TTGGCCTTGA TCGGACTGCT GGACGCCGGG
TACGCGAAGG CTTTCGATCC GGAGGCAGTC GGAGCCAAGC CATTGAAAAG TGTGTACTCG
TTCCTTTGTG CGTGGCAAAC CGAGTCGGGG AGCGTGGAAG ACGCTACCCA CATCGAAGAG
TCGGAGCGGC GCTGGCCTTT TGATGCTTTG CCAAGATTCA CATCAGAGCG CTGTGATGCA
CTGATGCAGG AACTGCCAGA GGCGTTATCT GCGCTTGATC AACTGTGCGG CATGCGCGTG
GTGCGGGTAG AGGCGGCCGC GTTTGGGCGC GGTCGAAACA CCACTGAGTT TGTTGATGCA
CGTGGCACAA GCTGGCAACT GACCAAGCCG CAATTCACCA GCCTTTACGA CAACACGGTG
GAGCAGCGCC GGCCCGCGCA TGGTTCGCGG GCTCTCAAGG TCTGGACGGA AACGCGACGC
ACCTCGGACA ACGATCTGCT GGCGGTGCAC ACATTGGACG CCAAGCTAGG GGGGTGGTTC
CAGTTGGCAT CAGTGCAGGC GGACGATGTC GAAGTTTTGA AGGCTGTTCC TGCCAAACCA
GATGCTGTCG AAGAGGGCTT CGTACCCGTG AAGGCTGAAC CGTCAATCGG CGACAATATG
CCGTCAATGC CGTTACCTTC GGTGGCTGGA AAGCCACTCG GTGCGTCAGT CAACGAGGGC
TCGACGCCAG TGCCTGTAGA TCATTTGCGT GAATGGCAAC TAGCGTCGTG GAAACAGCGT
TTTGGGGTCG CTAGGACGAG CGCAGACAAA GATGCTGGGG ACAGCAGCCA TTTCCGCATT
GCGCTTCTCC AGTGGCGAAT TACCGACAGC TACGCACATC CCATAGCGGA GGCAGGCCTC
AATGGATTAC CCCTGGGGCA GTCGTCTCTG GAAGAACTGC GTAAGCAACT GGCGGGCAAT
TTCAAGGACT TGAACAAAGC CGCAAAGCGA GGAGCAGAGT TTCATTGGGG AAATGCCGAA
GGTGTCATCT CCTGGCCAGA GCATCGGCGG CGGGTTTTCC TTCGCGAGGC GTTGAAGGCT
TGCCAGCATC TGAACGTGCA GTTGCTGGTA CTGCCTGAGG TTTCGGTACG GCTGGATACC
GTTACGTGGT TGAAGAAAGA GTTGCGCCAG TATCCTGATT TGGCTGTGCT GGCAGGTACC
TACCGACATT TTAGCGACAA GGTCGACTCC GAACATTTGA TGGAGAAGCT GACACTCCTG
TGGCAGCCCA ACGACGAGTT GGCTGAGGCC TTGGGGGTGA AGGGGAAATC TGAGGTGATT
CAGTTTCAGC GTGGCAAAAA GTACCGCGCG GTGGCTGCCC ACGAACTGTT TCGACCGGAT
GTCAGCACGC TTGGCCCTTT GTTTACGGAG GAGCGCCTTC TGGAGACCCT GGAAGGCGAG
CGTAAAGGCG GCTGGTCAAG TAGTCAGTTG AAGGCGCTTA TCCCAGCGTT GATCCATGCG
CCGAACAAGC TGCGCTATTG CATGGAACTG ATCTGTTCCG AGCTGTTTCT GCTCACGAGC
CCTGCGAACC GCATACCCTT GCAGCAAGAA CTGGCGAAAG TGCTGAAGCA CTTCAGCGAT
GACGCAAGCG TCGCCAAGAA ACACGTAGAC GATGACTTCG AAGCGCTCGG TGAGTTGCTA
ACCGTGGCGC AGTCAAATCG AGAGCGCCGC TCAGTATTGC TGGTTCCCGC CTGTACGACC
CGCAGCAACG ACTACTGGCA CGCCGGTCAA GCCAGTGTCT TGGCCTCAGG TACTGCCACA
GTTTTCTGCA ATACAAGCAA TTTGCATGGC GCTGGCGGAA GCTGCTTCAT CGGCATCGAC
TCGGTCGTAC CGCAGAACGG GCACCATGCT GGTATCGTCC ACCTCCTGAC GCCGTATCAC
GGGTGGCACA AGGGCATTCT GCAGCCTAAT GGGAAGGGCG CCTTATCCAA GACAGATCAA
GCGCTGGTTG TCGTGGATCT CGATCCAGTT CATGTGGTCA GCGGCAAGCC GCGCCCCCAG
TTGCTGCCCG AGCCCATGTC TTTGGTGGCC TATCTGCCAA TTGTGGAAGT GGTGAACAAG
CAGGAAAACG CCGAAAACTT GTCGACCGCA TTGAAGGATG TGTTGACGCC CGAGGGCCAG
AATGTGCTCC GCCGTTTGCT GAAGGCAAAA ACGTTTCCGG CGCCGTGCGG CCCTCTGCAT
GAGCGTGGCG CATTCGGCAA AGCCTTAGAA GAGTTGCTGG AGGCCAAGAG GAATGGCGAG
TTGAAGCCAG ACGTCGGTGG CGAAACTCTG GACACGTTCG CGGCCCTTTT CGGCGACGCG
AGCGCCGTAC GAGAGCGCAT CATGGCGTGG CTGAAGGATC GCCATCAGCA ACCAGCGCCT
AAAGCTGGCA AGGAACAACT GGAGCCAGCA TGGCTGGACT TCCTCGTCGC GGATTTGACC
TGGGAGGCCC ACGCGGACGA CGCCCCTTCA ATTCGAGTCC CGGCATGGCG GGCTGATCCC
AGTCCGACCA AGGCGACGTC CGGGGGAGCC TAG
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| Protein sequence | MDRYDIGDLL AKVPLEEVVT RLGIETERRG GVTRALCPFH QDTRPSLNLY SADGNSPAHY
HCFACGAHGI AIDLVKQVEG LEFLPAVQWL ARQFSIRPIR NQASRRAGRA GASETAQEFA
QRIFNARHDV EQFQSWCDER GFDPAFLHGQ GLRCITRGVL VESLQAEPVG ERAGLIDELQ
SLGLIKRLRS YSPAAQGKLD LLDQFQDCFH DGRVVIPIRR GEAKRTEVVG FAGRALQSAP
PEGVPKYLLT PGFEKSEYLF NEPEAFRAVA QALKNNESAR LYLVEGFLDA LRLQSLGQPA
VALMGISLGK GQFERLTKLS QKMPGTAPLA YCIFLDNDPA GFGGADRLAR GLLGLTGVDM
RWVGMPWRTE PSLGKDPDSS LRGLSTPEEA AAWLKRYDLP AEAVLLASAL GSQDASELQL
PRWDKLAATA RERALFRTVL AVSKLHGRRS PDSVAARLKE SAWVWAQELH AMMGDPGGSA
RPNSRGMYLD ESYPRAALAR ALAYHGSRRG ELPSDDEAWQ TLSGNERLFD QTAFARLRAT
VADAKPWRQA ALLDAVQLPR KFTADPKVLG DPRLKVMPHP ADLHVQQLLL NELLTQRHDR
LAASGGVFSD GIPAVRWYAS RQAVEVTGPF DLLNEPDIER DEPETLSFGY QVDMDVLEGD
KTPSDQGMFR PFGQCWRAFM ACLTDQCHAI GPRVHVLRLD AKRYYDSIQR YLVRDALLTP
LKSALTTHGV PEGFRAIFGF HDADAPNWDA ALERLVSGLV FEYEYRDPGA VGAPRQSDAV
MGIAQGPVLS AYLGTIALFP VDEVARRFMR DTAERLPDGQ WRQRAGYARY VDDIVLFADS
QELLKKLREV LQAKSSELSI DLIHKGDRVR AGSPDQVMRQ LNEGRGLAAS VPAWETPIVG
DGDSDWSLGD DMPQVDRQCA LQLLRHPGLI GDPMLIATQV KTAISAPDLR PNDLGLCARL
LWWQVAATEL WPDGKAAWHC FEGLWNEACA GQPWVDAFKQ RGYDLLYAVE GLDKLMDPNP
WQANGLLLKE RDEHRAKRVH LAGLVCKPSF FVDVRPAENL EHVRRRARLV ARKARRLAHA
GAALVPPDVH EEERLTAIEW LCQASQTIAA NSDQHPVAAL RDRQPARIPG DDLAHAVIEQ
LKGTHLLSKT KEQDFAPSVP THGVSAIALA IDFILDSSPK RTGLQRLAQQ FPGLLSGRDV
NGRQLISNLP ITGELSSLYA IDPEQAADGT GRHLYRYSER GASTRAPTSV DLVQVTSTTE
LQYASEVQSY RFVESASDAV RLVVDVSEGA QRWDDLCALG TTEVDEPITQ KAVRLFYALL
SIHQYAAGED SKDAYVPFRP QLFSQGKALT STLHLLADRV PRKLLGASAW YHDQDDRVAS
VMVPKERADL WRVGWAVADV LGVAADMSGE TGERDEQLDD LGESHGDQSA TESFAARAKK
ELEGYVLRQQ LRKLQGAYLS EAQIETETVT SRDLPSTVRR ALKLLRTYPS DQNLHAQVRH
LLLIEAESRA MALRLQRRSA DDLRHALHRV FPDVLARLPL WSLQGLELER PAEHEKPLRP
ELALMVSLYR AMYPASASAS ADEVDKDSFL RVALALAAVG VGLRGCVASL WGASVASGSH
PMAEHLNVPA SWAMPDAVRL DPQGDYQAMR KRLLDGDWAA LCKASPWQWM LALIGLLDAG
YAKAFDPEAV GAKPLKSVYS FLCAWQTESG SVEDATHIEE SERRWPFDAL PRFTSERCDA
LMQELPEALS ALDQLCGMRV VRVEAAAFGR GRNTTEFVDA RGTSWQLTKP QFTSLYDNTV
EQRRPAHGSR ALKVWTETRR TSDNDLLAVH TLDAKLGGWF QLASVQADDV EVLKAVPAKP
DAVEEGFVPV KAEPSIGDNM PSMPLPSVAG KPLGASVNEG STPVPVDHLR EWQLASWKQR
FGVARTSADK DAGDSSHFRI ALLQWRITDS YAHPIAEAGL NGLPLGQSSL EELRKQLAGN
FKDLNKAAKR GAEFHWGNAE GVISWPEHRR RVFLREALKA CQHLNVQLLV LPEVSVRLDT
VTWLKKELRQ YPDLAVLAGT YRHFSDKVDS EHLMEKLTLL WQPNDELAEA LGVKGKSEVI
QFQRGKKYRA VAAHELFRPD VSTLGPLFTE ERLLETLEGE RKGGWSSSQL KALIPALIHA
PNKLRYCMEL ICSELFLLTS PANRIPLQQE LAKVLKHFSD DASVAKKHVD DDFEALGELL
TVAQSNRERR SVLLVPACTT RSNDYWHAGQ ASVLASGTAT VFCNTSNLHG AGGSCFIGID
SVVPQNGHHA GIVHLLTPYH GWHKGILQPN GKGALSKTDQ ALVVVDLDPV HVVSGKPRPQ
LLPEPMSLVA YLPIVEVVNK QENAENLSTA LKDVLTPEGQ NVLRRLLKAK TFPAPCGPLH
ERGAFGKALE ELLEAKRNGE LKPDVGGETL DTFAALFGDA SAVRERIMAW LKDRHQQPAP
KAGKEQLEPA WLDFLVADLT WEAHADDAPS IRVPAWRADP SPTKATSGGA
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