Gene Pnap_4669 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_4669 
Symbol 
ID4685865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008760 
Strand
Start bp55970 
End bp56608 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content52% 
IMG OID639826664 
Productvon Willebrand factor, type A 
Protein accessionYP_973827 
Protein GI121583396 
COG category[R] General function prediction only 
COG ID[COG4245] Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.264174 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value0.0341202 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGCGTT TACCTGTATA TCTCTTAGTT GACACTTCCG GCTCCATGAG CGGCGAACCC 
ATTGAAGCTG TCAAAAATGG TGTCCAGGTT CTGGTCTCGA CTTTGCGTCA GGATCCTTAT
GCGCTGGAAA CTGCGTTTTT ATCGATTATC ACGTTTGATA GTGAGGCGAG GCAAGTCGTA
CCCCTGACCG AACTTGCGAA TTTTCAGATT CCAGCGATTG TGGCAACCGG AACTACGGCA
CTGGGCTCAG CGCTGTCGTT GCTGGCTGAC AAAATCGAGA TGGAAGTGGG CAGGACAACG
GCCGAGGTGA AGGGGGACTG GAAGCCCATA GTCTTCATCA TGACTGATGG ATCTCCTACT
GATGACTGGA AAAAAGGGCT GGAGCGGCTC AAGACAGTAC GCACCGGCAT GGTTATCGCG
TGCGCAGCGG GGCCGGGAGC GGACACGACA GTCCTCAAGC AAATCACGGA AATTGTTGTC
CAGCTCAATA CCGCTGACGC CAGCACCATC AAAGCATTTT TCAAGTGGGT TTCAGCCAGT
GTTTCCAGCG GCAGTCAAAA AATAGACCTC GCAAAGAAAG AGGTAACGGG CCTGAGCGAT
TTGCCTCCAC CACCGCCTGA GGTTAACGTG GTTTTATAA
 
Protein sequence
MRRLPVYLLV DTSGSMSGEP IEAVKNGVQV LVSTLRQDPY ALETAFLSII TFDSEARQVV 
PLTELANFQI PAIVATGTTA LGSALSLLAD KIEMEVGRTT AEVKGDWKPI VFIMTDGSPT
DDWKKGLERL KTVRTGMVIA CAAGPGADTT VLKQITEIVV QLNTADASTI KAFFKWVSAS
VSSGSQKIDL AKKEVTGLSD LPPPPPEVNV VL