| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4906 |
|---|
| Symbol | |
|---|
| ID | 4685748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008759 |
|---|
| Strand | - |
|---|
| Start bp | 82892 |
|---|
| End bp | 84841 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639826548 |
|---|
| Product | pathogenesis-related protein |
|---|
| Protein accession | YP_973712 |
|---|
| Protein GI | 121583276 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.827624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.119775 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGG TACCAATCCT TGCCAACAAC GACCGCGACG CTGGGGTAGT CGAAGAAATC
TGCGGCTATC TCACTGAGGA GCCTCCCCGC AGCTACTTCC TTTTCGCGGG TGCAGGCTCA
GGCAAGACAA GGACTCTTGT TGAAGTGCTG CGTCGGCTGA CCGGTGTCCT GAAGCATGAG
AAAGGTGAAC AGCTTGCACG ACGCTTGCGG ACGTACGGGC GTTCGATACG GGTGGTCACG
TACACCAAGA ATGCGGTCGC GGTCATTAAT GGGCGCCTCG GGGACAACGA CTTGGTCGGC
GTATCCACTA TCCACTCGTT CTGTTGGGAA CTCATCAGCG GGTTCAACGA TGACATCCGC
GAGGCACTCA TAGCGGTGAA GGAAGCTCAG CTCGAGAAGG AGACTGCCAA GGCGCAAGCG
AAGCCAAGAG GTATCACGGC TGCGAAACAG CGGGACCTGG ACGAAATCAA GGCTGACATC
GAGGGGTTTA GAACAACCGA TGTGTTCATG TATCACCCTG ACCGCAACAC GTACGGGCCG
GGAGCACTTG CGCATAAAAA CGTCCTCGAC GCGGCGGCTT GGCTCCTCTG CAACAAACCC
ACGCTCCAGA CTATCCTCAG GGACCGTCAC CCCATCGTGC TCATCGATGA GTCTCAAGAC
ACGATAAAGG GCATGTTGGA CGCATTGATG GGACTGGCGG AGCCGAGGGG TAGCGGCTTA
ACCCTTGGAT TGCTTGGCGA CCACCGCCAA CGCATCTACA CCGACGGACA CTCTGACTTG
CCCAACTTGG TCCCGCAGAG TTGGGCAACG CCGGAGCTGC AAATGAACCA CCGCAGCCAA
GGCCGAATTG TCACGCTCAT CAACAGAATC TGGAAAGCGG AGTTGGATGG CCGGACTCAA
CCTACTACCG GAGTAGAGCA GCACCCTCGA ATTGAGAAGA CTGGAGGAGT GGTCAGGCTC
TATGTAGGCG ACACATCGCT TTCTCCGGAG GACAAAGTTC GTCGTGAACG CTGGTGCGCA
GACCAAATGC GGGAGGCTAG CGGAGCGGCC GCCTGGGGCA CGGGACAATA CCAGTTGCTT
GCTCTGGAAC ACAAGCTCGT CGCGACTCGC GGCTCGTTTC TCGACGTGTA CCAGGCAATG
GTCCTGCTTG ACCCGAACGC AGCAGCGCCT GCTGGTAGCG GCGATAACAA GGGACCCGCT
GCAGTACAGG TGATGTTGAA CGAGCTTGCT CATCTCGAGG CATGCGTTGG CGCTGATGGC
GCACTGAACG AGTTTTTGGC CACAGAGGTG TTTCGGCGGC ACGGAAGCCT CGACAACATC
CCAGAAGACC CAGCGACGAG AGCTGCCCGT GTGGATGAGA TGCTCAAGGC GATGGCGGCA
TTTGTCGCCG CCTGTACCGA TGAGAAGTCC ACCGCTGAGG ATGTGCTTTT CCCGGTCTTG
AGCGCCAATC TGTTTGAGTT TGACCATCGC CTCTCGGCGG CGTATGCCGA CAAGTCGCCT
CCTCCTGCAG CTCCTGGCCG AGGTGAGGAA GAGTCAAAGC AGGCAAGAAT GCGTCGCGGC
TGGTGCGCTC TGTTTGATGC TCCCTGGAAC CAACTGAAGC GATACCGTAC CTACCTTGCC
GGAAATTCTG TGCTCGCCAC GCATCAGGTC GTGAAAGGTT CGGAGTTCAT GCATGTCATG
GTAGTGATGG ACGACGCCGT CGCCGGCGGC AACCAGATTT CCTACGACAA GATTTTTGGG
GGTACTCAGC TCAGCAAGGG GGACAGGGAA AATGTGGATA AGGGAAAGGA GACGACTATC
GACCGCACCT TGCGCCTGCT GTATGTCACC TGCAGCCGCG CTCAGGAGTC GCTGGCTCTC
GTACTCTGGT CCTCCGACCA AGAAGCTGCG CTGACTCGAA TCAAGGAAAG CGGCTGGTTT
ACCGACGACG AGTTTCAAGC AATCCAGTAG
|
|---|
| Protein sequence | MSAVPILANN DRDAGVVEEI CGYLTEEPPR SYFLFAGAGS GKTRTLVEVL RRLTGVLKHE
KGEQLARRLR TYGRSIRVVT YTKNAVAVIN GRLGDNDLVG VSTIHSFCWE LISGFNDDIR
EALIAVKEAQ LEKETAKAQA KPRGITAAKQ RDLDEIKADI EGFRTTDVFM YHPDRNTYGP
GALAHKNVLD AAAWLLCNKP TLQTILRDRH PIVLIDESQD TIKGMLDALM GLAEPRGSGL
TLGLLGDHRQ RIYTDGHSDL PNLVPQSWAT PELQMNHRSQ GRIVTLINRI WKAELDGRTQ
PTTGVEQHPR IEKTGGVVRL YVGDTSLSPE DKVRRERWCA DQMREASGAA AWGTGQYQLL
ALEHKLVATR GSFLDVYQAM VLLDPNAAAP AGSGDNKGPA AVQVMLNELA HLEACVGADG
ALNEFLATEV FRRHGSLDNI PEDPATRAAR VDEMLKAMAA FVAACTDEKS TAEDVLFPVL
SANLFEFDHR LSAAYADKSP PPAAPGRGEE ESKQARMRRG WCALFDAPWN QLKRYRTYLA
GNSVLATHQV VKGSEFMHVM VVMDDAVAGG NQISYDKIFG GTQLSKGDRE NVDKGKETTI
DRTLRLLYVT CSRAQESLAL VLWSSDQEAA LTRIKESGWF TDDEFQAIQ
|
|---|
| |