| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4896 |
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| Symbol | |
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| ID | 4685744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008759 |
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| Strand | + |
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| Start bp | 68478 |
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| End bp | 71603 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639826538 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_973702 |
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| Protein GI | 121583266 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.71874 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.291391 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACTG CCGCTGCCTT GCCTGCCCTA TCGGCCTTGC CGGACTACGC CGAGCTGCGC
TGTATCTCCA ACTTCACGTT TCTCAATGGC GCCAGCCGGC CCGAGGAGCT GGTGCTGCGC
GCCAGGGAAC TTGGCTACCG TGCGCTGGCG TTGACCGACG AGTGCAGCCT GGCCGGCATC
GTGCGTGCCC ATGGGGCCGC CAGGGAGGCC GGGCTCGCGC TGCTGGTGGG CGCGCAGTTT
TTAGTAGCGG ACGATGCGCC GTTCACGCTG ACCGTGCTCG TCTGCAACCT CAATGGCTAC
GGCAACCTGT GCCAATACAT CACGCGCCTG CGGCGTTCCT CCGAGAAAGG CCACTACCGC
CTGGCGCGCG ACAGCATCCA GGGCGCCGAC CTGGTCGACT GCGTCGTGCT GGTGTCGCCC
GGCCGGACTT CGAGCGCCGA GCAACTGTTG CAGCTGGGCC GCTGGAGCCT GCTGCACTTC
ACCGGGCGCT GCTGGTTCGG CGTTGAACTG CTGCGCCGGC TGGGCGACGC GATGTGGCTG
CACCGGATGC GCGAGGTCAG CGCCGCGACG GCGATTGCCC TGGTCGCCGT AGGTGACGTC
TGCATGCATG TGCGCTCGCG CAAGCCGCTG CAGGATGTCC TGACCGCCAC GCGTCTGGGC
AAGCGGCTGA CCGACTGCGG CTTCGAACTG CAGTCCAATG CCGAGCGGCA CCTTCGAAGC
CGGCTTCGCC TGGCGCAGAC CTATCCGGCC GCGCTGCTGG CCGAAACCCT CAAGGTGGCC
AGTCACTGCA ATTTTTCCCT CGATGAGCTG AAATACCAGT ATCCGCAAGA AGTGGTGCCT
CCAGATGAAA CCCCGGCCGC CTACCTGCGC CGGATGACCT ACGAAGGGGC CGGTCGGCGC
TGGCCGCACG GCATCGAGGC CCAGGTCCAG CAGCAAATCG AGCATGAGCT TGCCTTGATT
GGCGAGCTGC GCTATGAGCC GTATTTCCTC ACCGTCTACG ACATCGTCGC GTTTGCGCGC
TCGCGCCACA TCCTGTGCCA GGGGCGCGGC TCGGCGGCCA ACAGCGTGGT CTGCTACTGC
CTGGGCGTGA CCGAGGTGGA CCCGGCGCGC ATGAGCGTGC TGTTCGAGCG CTTTATCAGC
CGCGAGCGCA ATGAGCCGCC CGACATCGAC ATCGATTTCG AGCATGAGCG GCGCGAAGAA
GTCATCCAGT ATCTGTACCA AAAGTACGGG CGGGACCGCG CGGCCCTGAC CGCCACGGTC
ATGACCTACC GCCCCAGGTC GGCGATTCGC GATGTCGGCA AGGCGCTCGG CTTTGACCTC
GCGACGCTGG ACCTGCTCGC CAAATCCCAC CAGTGGTGGG ACGGCGGCCA GGTCGATGCC
GAGCGCCTGA CCGCGCTCGG CTTGTTTCCG GACGACCTGG CGGTGCAGCA GCTGATGCTG
CTCACCACCC AGCTGATGGG TTTCCCCCGG CACCTCTCGC AGCACACCGG CGGCTTTGTG
CTCACGCGCG GGCTGCTGTC ACGCATGGTG CCCATCGAGA ACGCCTCGAT GCCCGGGCGC
ACGGTGATTC AGTGGGACAA AGACGACCTG GACGCCACGG GTCTGCTCAA GGTCGATGTC
CTGGCGCTGG GCATGCTCAC GGCTCTTCGC AAGGCGCTTG AATTCGTCGG CGCGCGGCGC
GGCCATTCGT TTGAAATGCA GGACATCCCG CCCGAGGACC CGGCCACCTA CGAGATGATG
TGCCAGGCCG ACACGGTCGG GGTGTTCCAG ATTGAATCCC GGGCGCAGCA GGGCATGCTG
CCGCGCCTGC AGCCCAGGTG CTTTTACGAC CTGGTCATCG AGGTGGCCAT CGTGCGGCCC
GGCCCCATCC AGGGCGGGAT GGTGCATCCC TACCTCGCCC GCCGCCAGGG CAGGGAAGCG
GTCAGCTACC CCAGCGAGGC GCTGCGCGAA GCGCTGGGAC GAACGCTCGG GGTGCCGGTG
TTCCAGGAGC AGGTGATGCA GCTTGCCATC CTGGCCGCCG GTTTCACGCC GGGCGAGGCC
GATGGCTTGC GGCGGGCCAT GGCGGCGTGG AAGCGCAAGG GCGGCCTGGC GCAGTACTAC
GACCGCATCG TCGGAGGCAT GACGGCGCGC GGCTATGAGA AGGAATTTGC CGTCGCGATA
TTCGAGCAAA TCAAGGGCTT TTCGGAATAC GGATTTCCCG AGTCGCATGC CGCCTCGTTT
GCCCTGCTGG TCTATGCCAG CGCCTGGCTC AAGCGCGCCG AGCCGGCCGC TTTCCTGGCT
GCGCTGCTCA ATGCCCAGCC GCTGGGGTTC TACGCGCCCA GCCAACTGGT CCAGGATGCC
AGGCGTCACG GGGTCGAAGT GCGCCCCATC GACGTGATGG CCAGCGACAT CGATGCGACG
CTGGAGGACC TGCCGCAGGT GCCGGCAGTC CGCCTGGGCT TGCGCTTGGT CGCCGGGCTG
GGGCGGCTAG CAGCCGCGCG GATTGTCGCC GCGCGAATGG ACTGCCCCTT CGAGAGTGCC
GAGGACCTGT CGATGCGAGC GGATTTGGCG CTGCATGAGA TGAAGCTGCT GGCCGCAAGC
GACGCCCTGG CGAGCCTGTC GGGGCACCGC CGCCAGCAGG TCTGGGACGC CAGCGCGCTG
CATGCAGCGC CTGCGCTGCT GCGCGCAGCG CCCGTGGACG AGGAGTTGTT GGAGTTGCCC
GAGGCACCCG AAGGCGAGGC GATTGGCTGG GACTATGCTG CCACCGGGCT CACGCTCAGG
CGCCACCCGA TGGCGTTATT GCGAGCGCGC CTCGTGAAGC ACCGCTTCCT TTCATCGGGC
GAACTGCGAG AGCATCCGGA TGGCCAGATG GTGCGGACCT GCGGCATGGT CACGCTCAGG
CAGCAGCCCC CGGCGGCGAA CGGGACGGTG TTTGTCTCGC TCGAGGACGA GGACGGCGCC
ATCCAGGTGA TTGTCTTCAA GCGCCTGCGG GAAAAACAGC GCGAGGTGTT GCTGGACTCC
CGGCTGCTGG GCGTGTACGG CCAGTGGCAG CGCGATGGCG GCGTGCGCAA TCTGGTGGCG
CACCGGCTGG TGGACCTGAG CCGCTGGCTG GGCATGCTTG AAGTCTCCAG CCGGGGCTTC
AAGTAA
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| Protein sequence | MATAAALPAL SALPDYAELR CISNFTFLNG ASRPEELVLR ARELGYRALA LTDECSLAGI
VRAHGAAREA GLALLVGAQF LVADDAPFTL TVLVCNLNGY GNLCQYITRL RRSSEKGHYR
LARDSIQGAD LVDCVVLVSP GRTSSAEQLL QLGRWSLLHF TGRCWFGVEL LRRLGDAMWL
HRMREVSAAT AIALVAVGDV CMHVRSRKPL QDVLTATRLG KRLTDCGFEL QSNAERHLRS
RLRLAQTYPA ALLAETLKVA SHCNFSLDEL KYQYPQEVVP PDETPAAYLR RMTYEGAGRR
WPHGIEAQVQ QQIEHELALI GELRYEPYFL TVYDIVAFAR SRHILCQGRG SAANSVVCYC
LGVTEVDPAR MSVLFERFIS RERNEPPDID IDFEHERREE VIQYLYQKYG RDRAALTATV
MTYRPRSAIR DVGKALGFDL ATLDLLAKSH QWWDGGQVDA ERLTALGLFP DDLAVQQLML
LTTQLMGFPR HLSQHTGGFV LTRGLLSRMV PIENASMPGR TVIQWDKDDL DATGLLKVDV
LALGMLTALR KALEFVGARR GHSFEMQDIP PEDPATYEMM CQADTVGVFQ IESRAQQGML
PRLQPRCFYD LVIEVAIVRP GPIQGGMVHP YLARRQGREA VSYPSEALRE ALGRTLGVPV
FQEQVMQLAI LAAGFTPGEA DGLRRAMAAW KRKGGLAQYY DRIVGGMTAR GYEKEFAVAI
FEQIKGFSEY GFPESHAASF ALLVYASAWL KRAEPAAFLA ALLNAQPLGF YAPSQLVQDA
RRHGVEVRPI DVMASDIDAT LEDLPQVPAV RLGLRLVAGL GRLAAARIVA ARMDCPFESA
EDLSMRADLA LHEMKLLAAS DALASLSGHR RQQVWDASAL HAAPALLRAA PVDEELLELP
EAPEGEAIGW DYAATGLTLR RHPMALLRAR LVKHRFLSSG ELREHPDGQM VRTCGMVTLR
QQPPAANGTV FVSLEDEDGA IQVIVFKRLR EKQREVLLDS RLLGVYGQWQ RDGGVRNLVA
HRLVDLSRWL GMLEVSSRGF K
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