| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4511 |
|---|
| Symbol | |
|---|
| ID | 4685582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008758 |
|---|
| Strand | + |
|---|
| Start bp | 80399 |
|---|
| End bp | 81685 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639826361 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_973526 |
|---|
| Protein GI | 121583085 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.336672 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTT CGTTTCCGAT TTACCGGGTC GCCGTTGCTG CCGTGCTTGT TGCCATGGGG
TCCCCGTCCT GGGCAACTGA CCCGTTGACC CTGGTGGAGG CGCAGCGCAT TGCGGTGGGC
CGTTCCCAGC AACTGCTTGC CCAGGATGCG CTCATCACTG CAGCTCGCGA GCAGGGCGTG
GCGGCCGGTC AATTGCCTGA CCCAGTGCTC AAGCTGGGCA TTGACAACCT GCCGGCCAAT
GGACCGGACC GGTTGAGCCT CACGCGCGAC TTCATGACCA TGCGCCGTAT CGGCATCATG
CAGGACATTC CACGGCTTGA AAAACGCCAG CTCAGGGCGC AAAAGTTCGA GCGCGAGGCC
GAGCGGACTC GGGCGCAGCG CCTGTTGACG CTGGCCAATG TGCAGCGTGA CACCGCACTG
GCCTGGCTGG ACCGCTATTA CGCGCAAGCC CAGCGTGAGT TGCTGCAGCA GCAGGTCGAG
GAAACCACTT TGCAGGTGCA GGCCGCCGAC AGTGCCTTTC GCACCGACCG GGGCAGCCAG
GCTGACGTGT TCGCAGCCCG CGCCGCAGTG ATCACTTTGC AGGACCGCCT CAGCCTGATT
GACCGCCAGT CCCGCAGCGC TACGTTGATG CTGGCCCGGT GGGTGGGTGC TTTGGCTGCT
GAACGGCCCA CAACCGGATC GCCGCCCTGG CAAAGCACCC CGCTGCAAGC GGAGGTTTCG
CTCGAGCACT TCAAGCGGCA TCCTGACCTA CTGGCCGTAA GCGCCGAAAT TGATGCCGCT
GAAACAGACG CGCAACTGGC ACAGACGAAC AGGAAGGCCG ACATCAGCGT GGAAGCAAGT
TACGCCCAGC GCGGCCCGGC CTATTCCAAC ATGCTCTCCA TCGGGGTTTC CATTCCCTTG
CAGTGGGACC AAAGCAATCG CCAAAACCGT GAACTGAGTG CCAAGCTGGC CATGGTCGAC
GAGGCCAAGG CGAGGTATGA GGACATGCTG CGCAAAACCG AAGCCGAAAT CCGCAGCCTG
CTCAACGACT GGCAAACCGG CAAGGAGCGG CTGGCAAGGT TTCATGAGGA GCTGATTCCC
AATGCTCGCC AGCGCTCTGA GGCAACCCTG ACGGCGTACC GCACCGGCAA AAGCGATCTG
GCCGCCGCGC TGTCAGCTCG GCGCGACGAA ATCGACGTGC GCATGCAGGC CCTCACGGTG
GAGATGGAAA CGGCGCGCGC CTGGGCGCAG GTCAACTTCC TCCTGCCCGA ACCACACACT
TCGGCCACCG CCAAGGATCA ACCATGA
|
|---|
| Protein sequence | MSFSFPIYRV AVAAVLVAMG SPSWATDPLT LVEAQRIAVG RSQQLLAQDA LITAAREQGV
AAGQLPDPVL KLGIDNLPAN GPDRLSLTRD FMTMRRIGIM QDIPRLEKRQ LRAQKFEREA
ERTRAQRLLT LANVQRDTAL AWLDRYYAQA QRELLQQQVE ETTLQVQAAD SAFRTDRGSQ
ADVFAARAAV ITLQDRLSLI DRQSRSATLM LARWVGALAA ERPTTGSPPW QSTPLQAEVS
LEHFKRHPDL LAVSAEIDAA ETDAQLAQTN RKADISVEAS YAQRGPAYSN MLSIGVSIPL
QWDQSNRQNR ELSAKLAMVD EAKARYEDML RKTEAEIRSL LNDWQTGKER LARFHEELIP
NARQRSEATL TAYRTGKSDL AAALSARRDE IDVRMQALTV EMETARAWAQ VNFLLPEPHT
SATAKDQP
|
|---|
| |