| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4333 |
|---|
| Symbol | |
|---|
| ID | 4685388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008757 |
|---|
| Strand | + |
|---|
| Start bp | 244510 |
|---|
| End bp | 245103 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639826192 |
|---|
| Product | putative fimbrial protein |
|---|
| Protein accession | YP_973357 |
|---|
| Protein GI | 121582915 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.306906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.754406 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTT CTCCTCGCGT TTCCCATGCT CGCCCTGCTC TGAAGCAACA AACTGGTTTC
ACCCTGGTCG AGTTGCTGGT GGTGGCAGCC ATTATTGCGA TTTTGACCAT CGCTGCACTT
CCGCAAATTC AGGCCTATAT CGTGAGCGGC AAAGTCGGGC CTGCGAACAA CGAAATGCAG
CGCGGCTTGA CGCGTATGAA AATCAACGCC GAAGGCAACG GCACGACCCC GTACAGCGGT
GTCACCACCG CAGTGTTCGC AAACACCATG CGTGATGGTT CGGTCTTCAC CGTGGCCGGT
GTGGCTGGTG CTGCAACCAT CAAGCATGGC CTCACAGCTT CGGGCGCTGG TGTTGTTGCT
GTCGCACCCG CAAAGATCGT GGCTACTGGC GATGCATTTT CCATCACGAT GAATGGCGTG
AACCGTGGCG CTTGCCCCGA TATTGCCGCA ACGATGCAAA AGTCTGCCGC CCAGATCGAC
ATCAATGGCA CTACTGTCAA GCCTATCGGC GGCAAATTCG ATGGCGCAGC GGCCACCAAT
GCCTGTATTG ATACCAACAC AGATACCAAC GTGTTTGTTT TCACTGTTCA GTAA
|
|---|
| Protein sequence | MKISPRVSHA RPALKQQTGF TLVELLVVAA IIAILTIAAL PQIQAYIVSG KVGPANNEMQ
RGLTRMKINA EGNGTTPYSG VTTAVFANTM RDGSVFTVAG VAGAATIKHG LTASGAGVVA
VAPAKIVATG DAFSITMNGV NRGACPDIAA TMQKSAAQID INGTTVKPIG GKFDGAAATN
ACIDTNTDTN VFVFTVQ
|
|---|
| |