| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4238 |
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| Symbol | |
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| ID | 4685334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008757 |
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| Strand | + |
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| Start bp | 111292 |
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| End bp | 112134 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639826098 |
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| Product | conjugal transfer protein TrbG/VirB9/CagX |
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| Protein accession | YP_973263 |
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| Protein GI | 121582821 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
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| TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCGCT TTCGCTTTCA CTCAGCCACC ACTGCACTTG TCACGGGTGG GTTACTGGCC
ATGTGCTGTC AAGGCAATGC GGCCGTGTCC AGCCCGCCCA ACAGCGCAGT CAATGGCCTA
TCGGTTGCCG TGCCAGGCGG TCTGGACTCG CGAATCCGGG TTTTTGCATA TTCTCCCGAT
GTGGTTTACA CGCTGCCGGT GACGGTCGGC ATGCACACCC ATATCCCTCT CGGGCCGGAT
GAAGAATTGA TCGAAAAGCC CAAGATGGGC GAGACGATTC AATGGCGGGT ATCCGGGAAC
CAGAACAACA TTTATATCAA GGCGCTGAAG GCAGATGTCA GCACCTCCCT CACACTGGTC
ACGGACAAGC GCGTTTACCA GTTCGAGCTC GTCGCGACAA CCCGTGCAAC GGAGCGGATT
CAAAAAGCCT ATTTCGTCTA TCCGGACGAT GAGGAGGGCA TCCTGCTCAA CCAGCAAGCC
AAAACCAGCA AGCGAGCGGA CGCGGCGGCC GCAGAAGAAG AGCGCAAGCG TGATCAAGAG
CTTTCCCCGC AGCCCATCAG CCCAAATAAT CTGGTGTTCT TTCGCGTCGA AGGCAACAAG
GAGTACGAAC GCATGCACGC CTATGACGAT GGGCGGATGA CGTTTATACG CATGCCGCCG
GGCATTCAGG ATCTGCCCGC GTTGTTTTTG GTGGACACCG ATAACAAACT CGTGCCGATC
AATTACACGG TGCTCGACCG CAAGGGACAC GATGACCGCG ACGTTCTCAA GGTGGAGCGT
ACCAATCCCA AATGGCTGTT GAAGATCAAG AAATCTGTCG AAGTCAAGCT CACGAAAGAA
TAG
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| Protein sequence | MIRFRFHSAT TALVTGGLLA MCCQGNAAVS SPPNSAVNGL SVAVPGGLDS RIRVFAYSPD
VVYTLPVTVG MHTHIPLGPD EELIEKPKMG ETIQWRVSGN QNNIYIKALK ADVSTSLTLV
TDKRVYQFEL VATTRATERI QKAYFVYPDD EEGILLNQQA KTSKRADAAA AEEERKRDQE
LSPQPISPNN LVFFRVEGNK EYERMHAYDD GRMTFIRMPP GIQDLPALFL VDTDNKLVPI
NYTVLDRKGH DDRDVLKVER TNPKWLLKIK KSVEVKLTKE
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