| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4228 |
|---|
| Symbol | |
|---|
| ID | 4685276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008757 |
|---|
| Strand | + |
|---|
| Start bp | 100075 |
|---|
| End bp | 100788 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639826088 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_973253 |
|---|
| Protein GI | 121582811 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.620306 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA ATATCAAAAA AAGCCTCGCC ATTGCCACCA TCGCGTGTGC GGGTTTCTTG
CCGACCTTCT CGCAAGCCAT GCTAGTTTTC GACGCAGCCA ATTACTCGCA AACCACCATC
ACCGCCATCC AACAGATCAA GGCGCAAATT GATCAGGTCA GGCAACTGCA GGAGCAGATC
AAATCTAACA GTGCCAACTT TGCCGGCAAA GATATTGCCG ACCTCAAAAG GGAGTATGAC
AAAGTAAAAA GGGTCTATGA CTCCGCAAAT GCCTTGCAGA ACACTTTGCT TGGTGTGCAG
CAAAACTTTG ACAACCTCAA GGCGATGTTT GGCTCGGGCA ACTACCAGGA CTTCGGATCG
ATGGCCGTGT CCATCGGGGA TCGCGCAAAA GCCGGCGATG CGGTGGCGAA AAACCTCTAT
GACAACTCCA GGCGGGCGCA AGACCAAATG AAAGATGCGT TTGACCGGCA CCAAAAAATT
GTTGACCAAG CCAGCAACGT GAGTGGCGTC ACCGAAGCGA CTCAAGCGAC GACCGCTGCA
GTCGGGGTGC TGATTCAACA AAATAACAGC ATGCTGGCCA TGATGGCGGC CGATCAGACG
AAAAAAGCCG TTGATGCCTC AGAAATCAAC ACTGAAAAGC AAGAGCGTGC CCAGGCAGAG
ATGAAATACC AGCAAAACAT GTCATCAGAA CTCAAGAAAA TCTTGAAGAA GTAA
|
|---|
| Protein sequence | MKLNIKKSLA IATIACAGFL PTFSQAMLVF DAANYSQTTI TAIQQIKAQI DQVRQLQEQI
KSNSANFAGK DIADLKREYD KVKRVYDSAN ALQNTLLGVQ QNFDNLKAMF GSGNYQDFGS
MAVSIGDRAK AGDAVAKNLY DNSRRAQDQM KDAFDRHQKI VDQASNVSGV TEATQATTAA
VGVLIQQNNS MLAMMAADQT KKAVDASEIN TEKQERAQAE MKYQQNMSSE LKKILKK
|
|---|
| |