Gene Pnap_4202 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_4202 
Symbol 
ID4685199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008757 
Strand
Start bp79110 
End bp80123 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content64% 
IMG OID639826062 
Productconjugal transfer protein TrbG/VirB9/CagX 
Protein accessionYP_973227 
Protein GI121582785 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02775] P-type conjugative transfer protein TrbG 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.250287 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.746968 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCGT CTTTGCGCAT TTACGTATTT CTGTCTCTAC TGGTCGCCAC ATCAATGACC 
CTCTCGGGCT GCGCCACGCC GGGCAAGCCG CCGCCGACCA TCACGCTCGA TGAGCCGGTT
GCGGCGCAGC CGCTACCCGA GTTGCCCAAG CCCGTCGAAG TGGTCGCGGT TCCGCAGCCT
TTGCCATTAC CCGAGCAGTT GAAGCTGTTG CCGGATGAGC TGGAGGCCAA GACGGCACCT
GAATCGGCCG ACGAGAAGGT ACGCGTTACG CGGGCCAATC AGGAGGCCCG CATTGCACCG
ACGCGAGAGG GCTACGTCAA TGCGATCCAG GTCTGGCCGT TCACTGATGG CGCGCTGTAC
CAAGTCTATG CCAGTCCTGG CCGGGTGACG GTGGTTTCGC TCCAACCCGG CGAGGAACTG
GTGACGGTTG CCGCTGGTGA CACCGTGCGC TGGATCGTGG GCGACACGTC CAGCGGCGCG
GGGGCCAGTC TGCGCGTGAG CGTTCTGGTC AAGCCCACGC GCAGCGGTCT CAAAACCAAT
CTGGTCGTGA CCACCAACCG GCGCACCTAC CTGATTGAGC TGACCTCGAC CGAGAAGGCA
TGGATGGCAT CCGTGTCCTG GGACTATCCG AAGGACCGCA TGCTGGCCTT GCAGCGCCAG
GCGCAGGCGG CACAGATTGC CGCACCGGTC GATGCGGGCC TGTCGTTGGA GAAAATCCGT
TTCCGCTACG CCATCACGGG CAGCAATCCA CCCTGGAAGC CGCTGCGCGC CTTTGACGAT
GGCGAGAAGG TCTATATCCA GTTCCCTGGC GGCATTGCGC AGGGCGAGCT ACCACCGCTG
TTCGTCATCG GCGCGCAGGG GGACGGCCAA CTCGTGAACT ACCGTTTCCG TTCGCCGTAC
TACATCGTAG ACCGGCTGTT CGGCGCGGCC GAACTGCGCC TGGGCGCTGA CAAAGGTGAC
GTGGTGCGGA TCGAGCGCAC GGATGGGACT GTGAGCGGGA CGCGGAGGAA CTGA
 
Protein sequence
MKPSLRIYVF LSLLVATSMT LSGCATPGKP PPTITLDEPV AAQPLPELPK PVEVVAVPQP 
LPLPEQLKLL PDELEAKTAP ESADEKVRVT RANQEARIAP TREGYVNAIQ VWPFTDGALY
QVYASPGRVT VVSLQPGEEL VTVAAGDTVR WIVGDTSSGA GASLRVSVLV KPTRSGLKTN
LVVTTNRRTY LIELTSTEKA WMASVSWDYP KDRMLALQRQ AQAAQIAAPV DAGLSLEKIR
FRYAITGSNP PWKPLRAFDD GEKVYIQFPG GIAQGELPPL FVIGAQGDGQ LVNYRFRSPY
YIVDRLFGAA ELRLGADKGD VVRIERTDGT VSGTRRN