Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_4202 |
Symbol | |
ID | 4685199 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008757 |
Strand | + |
Start bp | 79110 |
End bp | 80123 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639826062 |
Product | conjugal transfer protein TrbG/VirB9/CagX |
Protein accession | YP_973227 |
Protein GI | 121582785 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02775] P-type conjugative transfer protein TrbG |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.250287 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.746968 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCGT CTTTGCGCAT TTACGTATTT CTGTCTCTAC TGGTCGCCAC ATCAATGACC CTCTCGGGCT GCGCCACGCC GGGCAAGCCG CCGCCGACCA TCACGCTCGA TGAGCCGGTT GCGGCGCAGC CGCTACCCGA GTTGCCCAAG CCCGTCGAAG TGGTCGCGGT TCCGCAGCCT TTGCCATTAC CCGAGCAGTT GAAGCTGTTG CCGGATGAGC TGGAGGCCAA GACGGCACCT GAATCGGCCG ACGAGAAGGT ACGCGTTACG CGGGCCAATC AGGAGGCCCG CATTGCACCG ACGCGAGAGG GCTACGTCAA TGCGATCCAG GTCTGGCCGT TCACTGATGG CGCGCTGTAC CAAGTCTATG CCAGTCCTGG CCGGGTGACG GTGGTTTCGC TCCAACCCGG CGAGGAACTG GTGACGGTTG CCGCTGGTGA CACCGTGCGC TGGATCGTGG GCGACACGTC CAGCGGCGCG GGGGCCAGTC TGCGCGTGAG CGTTCTGGTC AAGCCCACGC GCAGCGGTCT CAAAACCAAT CTGGTCGTGA CCACCAACCG GCGCACCTAC CTGATTGAGC TGACCTCGAC CGAGAAGGCA TGGATGGCAT CCGTGTCCTG GGACTATCCG AAGGACCGCA TGCTGGCCTT GCAGCGCCAG GCGCAGGCGG CACAGATTGC CGCACCGGTC GATGCGGGCC TGTCGTTGGA GAAAATCCGT TTCCGCTACG CCATCACGGG CAGCAATCCA CCCTGGAAGC CGCTGCGCGC CTTTGACGAT GGCGAGAAGG TCTATATCCA GTTCCCTGGC GGCATTGCGC AGGGCGAGCT ACCACCGCTG TTCGTCATCG GCGCGCAGGG GGACGGCCAA CTCGTGAACT ACCGTTTCCG TTCGCCGTAC TACATCGTAG ACCGGCTGTT CGGCGCGGCC GAACTGCGCC TGGGCGCTGA CAAAGGTGAC GTGGTGCGGA TCGAGCGCAC GGATGGGACT GTGAGCGGGA CGCGGAGGAA CTGA
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Protein sequence | MKPSLRIYVF LSLLVATSMT LSGCATPGKP PPTITLDEPV AAQPLPELPK PVEVVAVPQP LPLPEQLKLL PDELEAKTAP ESADEKVRVT RANQEARIAP TREGYVNAIQ VWPFTDGALY QVYASPGRVT VVSLQPGEEL VTVAAGDTVR WIVGDTSSGA GASLRVSVLV KPTRSGLKTN LVVTTNRRTY LIELTSTEKA WMASVSWDYP KDRMLALQRQ AQAAQIAAPV DAGLSLEKIR FRYAITGSNP PWKPLRAFDD GEKVYIQFPG GIAQGELPPL FVIGAQGDGQ LVNYRFRSPY YIVDRLFGAA ELRLGADKGD VVRIERTDGT VSGTRRN
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