| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4201 |
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| Symbol | |
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| ID | 4685207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008757 |
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| Strand | + |
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| Start bp | 78409 |
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| End bp | 79113 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639826061 |
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| Product | conjugal transfer protein TrbF |
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| Protein accession | YP_973226 |
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| Protein GI | 121582784 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.902696 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATTCA AACGCTCATT GGTGCGGTAT GCGGACACGC CGCAGCCTGC CACCCCGTAC
CAATCCGCCG AACAGGTCTG GGACGACCGT ATCGGTTCAT CTCGCGTGCA GGCAAAGAAC
TGGCGGTTGA TGGCTTTCGG TTGCCTGGTG CTGGCCTTGC TGATGGCTGG CGGTTTGGTC
TGGCGCTCGG CGCAGTCCAT CGTCACACCC TTTGTGGTGG AGGTGGACAG CGGCGGGCAG
GTGCGCGCTG TCGGTGAAGC GGCCACGCCC TACAAGCCGA ACGATGCGCA GACGGCCCAT
CACTTGGGGC GCTTCGTCAC GCTGGTGCGC TCGCTGTCCA TTGACCCCAT CGTCGTGCGG
CAGAACTGGC TGGATGCCTA TGACTACACC ACCGACCGGG GTGCTGCGGT ACTCAACGAC
TACGCACGCA CCAACGATCC CTTTGCCCGC ATTGGCAAAG AGTCGGTGAC GGTGCAGATC
ACCAGCATCG TGCGCGCCAG CGAGGCATCG TTCAACGTGC GTTGGACCGA GCGCCGCTAT
GTCAACGGCG CAGCTGCTGG ACTGGAGCGC TGGACCGCTG TTGTGTCCAT CGTCCTTCAA
ACGCCGCGCA CCGAGGAACG GCTGCGCCGC AATCCGCTGG GCATCTACGT CAATGGGTTG
TCGTGGAGCC GTGAACTCGA TTCTTCCGAA GGAGCCAAAC CATGA
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| Protein sequence | MRFKRSLVRY ADTPQPATPY QSAEQVWDDR IGSSRVQAKN WRLMAFGCLV LALLMAGGLV
WRSAQSIVTP FVVEVDSGGQ VRAVGEAATP YKPNDAQTAH HLGRFVTLVR SLSIDPIVVR
QNWLDAYDYT TDRGAAVLND YARTNDPFAR IGKESVTVQI TSIVRASEAS FNVRWTERRY
VNGAAAGLER WTAVVSIVLQ TPRTEERLRR NPLGIYVNGL SWSRELDSSE GAKP
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