| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4187 |
|---|
| Symbol | |
|---|
| ID | 4685240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008757 |
|---|
| Strand | + |
|---|
| Start bp | 63521 |
|---|
| End bp | 65158 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639826048 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_973213 |
|---|
| Protein GI | 121582771 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.554867 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.517417 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGGAA AAATGATGCG CGAGCCTCTG CTCGTCTCCA GCCTGATCGC TCACGCCGCC
AGTTACCACG CCGACACCGA GATCGTCTCT GTGCAAACCA CCGGAGGCGT CGAAAAGACG
ACCTGGAGCC AGGTCGAATG CAATGCACGA CGCCTGTCCT CGGCATTGGC CAAGCTGGGC
GTCCGGCAAG GAGACCGCTG CGCCACCATC GCCTGGAACA ACCGCCGCCA TCTGGAAATC
TACTTTGGCG TGTCTGGCGC AGGCATGGTG TGCCACACGA TCAATCCCCG CCTGTCTTTT
GAAGCGCTAA CCTACATAGT CAACCATGCC GAAGACCGGG TGCTGTTTGT CGACCGGACG
TTCCTGCCCA TCGTAGCCAA GCTGCGCCCA GCGTTGAACA CGGTCAAGCA CGTCATCCTC
ATGGGCCCTC GCGAGACCGA GGCACAGGGC ATGGTGGATG ATCTGTTGTT CTATGACGAG
GTGGTGACCA CTGGAGACCA AGACTCCCAG TGGCCCAACT TCGACGAGGA TCTTCCCTCG
TCACTGTGCT ACACCTCCGG TACCACCGGC CACCCCAAGG GTGTTCTGTA CAGCCACCGC
TCCACGATGT TGCATGCGCT GGCCGGCAAC CATCCGGACG GACTGGCGAT TTCGGCCCGC
GACACCGTCA TGCCGGTGGT GCCGATGTTC CACGTCAATG CCTGGGGTGT TCCTTACATC
GCGGCATCGC AAGGGGCAAA GCTGGTGCTA CCGGGCCCGA ACCTGGACGG TGCCAGCCTG
GCGGCGCTGA TCGATGCAGA GGAGGTCAGT CTGGCGCTCG GTGTTCCCAC CATTTGGATG
GGACTGCTTG CGGCGTTGAG GGCGCGTGGC ACCAAGCCCA AGAGTCTTAA GCGTACCGTC
GTTGGCGGCT CCGCGCTGCC ACCATCGATG TTTGCCGCAT TCCGCGACGA ATTTGGCGTT
GAGCTGATCC ACGCCTGGGG CATGACTGAA ACCAGCCCCC TGGGCACGCT GAACCAGCCA
CTGGCCCGCC ACGCCCACCT CGACCCGCAA AGCCAGAGCG ACTTGCGACT GGGGCAGGGC
CGCCCTCCTT ATGGCGTCCA ACTGCGCTTG GTCGACAACC TTGGGACCGT CTTGCCGTGC
GACGGCAAGA CACAAGGCAG CCTTCAAATC AAGGGGCATT GGATTGTCGA CACCTACTTT
GGCGCCACGA CCAGCGCTCT GACCGCGGAC GGCTGGTTCG ATACCGGCGA TGTGGCCACC
ATAGACGCTA ATGGTTACAT GATCATCCGC GACCGTGCCA AGGACATCAT CAAGTCCGGC
GGCGAGTGGA TTTCCTCCGT CGAGGTCGAG AACATCGCGA TCGGCCATCC CGCCATCGCC
AATGCGGCCG CCATCGGGGT ACCCCACCCC AAGTGGGACG AGCGGCCGGT GCTGGTCGCC
GTGAAGAAGG AAGGCGCGAC GGTATCCGAC GCAGATGTCC TGGCCTTCTT CAAGGAAAAG
GTGCCCGATT GGCAGATTCC GGACAAGGTT GTCTTCGTCG ATGCATTGCC GCTGAGTGGC
ACCGGCAAGG TGCTCAAGAA CAAGCTGCGG GAGTCCTACA AAGATTTGTT GACCGTTGAC
AGGGCGGAGT CCGCGTAA
|
|---|
| Protein sequence | MLGKMMREPL LVSSLIAHAA SYHADTEIVS VQTTGGVEKT TWSQVECNAR RLSSALAKLG
VRQGDRCATI AWNNRRHLEI YFGVSGAGMV CHTINPRLSF EALTYIVNHA EDRVLFVDRT
FLPIVAKLRP ALNTVKHVIL MGPRETEAQG MVDDLLFYDE VVTTGDQDSQ WPNFDEDLPS
SLCYTSGTTG HPKGVLYSHR STMLHALAGN HPDGLAISAR DTVMPVVPMF HVNAWGVPYI
AASQGAKLVL PGPNLDGASL AALIDAEEVS LALGVPTIWM GLLAALRARG TKPKSLKRTV
VGGSALPPSM FAAFRDEFGV ELIHAWGMTE TSPLGTLNQP LARHAHLDPQ SQSDLRLGQG
RPPYGVQLRL VDNLGTVLPC DGKTQGSLQI KGHWIVDTYF GATTSALTAD GWFDTGDVAT
IDANGYMIIR DRAKDIIKSG GEWISSVEVE NIAIGHPAIA NAAAIGVPHP KWDERPVLVA
VKKEGATVSD ADVLAFFKEK VPDWQIPDKV VFVDALPLSG TGKVLKNKLR ESYKDLLTVD
RAESA
|
|---|
| |