Gene Pnap_4144 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_4144 
Symbol 
ID4685416 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008757 
Strand
Start bp18910 
End bp19692 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content65% 
IMG OID639826008 
Product4-oxalocrotonate decarboxylase 
Protein accessionYP_973173 
Protein GI121582731 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3971] 2-keto-4-pentenoate hydratase 
TIGRFAM ID[TIGR03220] 2-oxopent-4-enoate hydratase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.246439 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCTG AACTGATCGA AACCCTGGGC GACGAGCTGT ACCACGCTAT GACCACCCAA 
ACCGTGGTCG AGCCGCTGAC GACTCGCCAC CCCGACATCA CCATCGAGCA CGCCTACCAC
ATCCAGCAGC GCATGATCTC GCGCCGCCTG CAGGCCGGCG AGCGCATCGT GGGCAAGAAA
ATCGGCGTCA CCAGCGCGGC CGTGATGAAC ATGCTGGGCG TCTACCAGCC CGACTTTGGC
TACATGCTCG ACGGCATGAT CGTCAGCGAC GGCGGCAGCA TCGCCATGTC TTCCCTGATC
CAGCCCAAGG CCGAAGGCGA AATCGCCTTC GTCCTGAAAA AAGACCTCAT GGGTCCCGGC
GTCACCAACG CCGACGTGCT GGCCGCCACC GACTTCGTCA TGCCCTGCTT CGAGATCGTC
GACTCGCGCA TCCGCGACTG GAAAATCAAG ATCCAGGACA CCATCGCCGA CAACGCCTCC
TGCGGCATGT TCGTGCTCGG CAGCACCGCC ATGGACCCGC GCAAGCTCGA CCTGATGACC
TGCGGCATGG TGCTGGAGAA AAACGGCGAG ATCATCGCCA CCGGCGCCGG CGCCGCCGCG
CTGGGCTCGC CGGTCAATGC CGTGGCCTGG CTGGCCAACA CCCTGGGCCG CCTGGGCATC
GGCCTCAAGG CCGGCGAAGT AATCCTCTCC GGCGCACTGG CCGCCATGTT CCCGGCCAAA
GCGGGCGACC ACTTCCGCGT CACCATCGGC GGCATCGGCG GCTGCTCGGT GCGTTTTCAC
TGA
 
Protein sequence
MTPELIETLG DELYHAMTTQ TVVEPLTTRH PDITIEHAYH IQQRMISRRL QAGERIVGKK 
IGVTSAAVMN MLGVYQPDFG YMLDGMIVSD GGSIAMSSLI QPKAEGEIAF VLKKDLMGPG
VTNADVLAAT DFVMPCFEIV DSRIRDWKIK IQDTIADNAS CGMFVLGSTA MDPRKLDLMT
CGMVLEKNGE IIATGAGAAA LGSPVNAVAW LANTLGRLGI GLKAGEVILS GALAAMFPAK
AGDHFRVTIG GIGGCSVRFH