| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_4140 |
|---|
| Symbol | |
|---|
| ID | 4685462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008757 |
|---|
| Strand | - |
|---|
| Start bp | 15183 |
|---|
| End bp | 15839 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639826004 |
|---|
| Product | OmpW family protein |
|---|
| Protein accession | YP_973169 |
|---|
| Protein GI | 121582727 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3047] Outer membrane protein W |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0330312 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.117689 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA TCGCTTCCAC GCTGACCTGT TTTGCCGTAG CGACTCTGTC GGCCGGCGTC
CATGCACAAG CCTTCACCAA CTCCCCGTCG CCATGGTCCA TTGGCGTCGG AGCCGTCCAC
CTGAAGTTCC ACCCCTCGGC GGATGTCTCG TTCGCTGGCA ACCCGGTGCC GGGTGGCGCG
GTGACGGTGG GCAGCGACAC CGTGCTGGGC GTGGAAATCG GATACGCCGT AACGCCCAAC
TGGACGGCCC GGCTGGATGT CGGTTCGCCG GTGGAAACCG ATTTCGGCGG CGCTGGAACC
TTGAGCCCGT TGGGAAAATT GGGCAGTGTC AAAGGTGGCC CGGCCATTTT GACAATGACG
TATTCGCCAG GCATGCTGGG GCCGATCCGA CCGTTTTTCG GCGGCGGTCT GACCTATCTG
AGGGTTTTCA GCACCAAAGA TGGCGCCGTG CAGAACCTCA AGGTTGACGA TGGGCTCGGT
ACGGCACTAA CGATCGGCGC GGACTGGCCC CTGTCGGATG GCTACAGCAT CGGCTTCTCG
GTTCAGAAGC TGTTTTTGAA AGTCAAGGCC ACGGGGACTG CCGGTGGCGC GCCGGTTCGT
GCCGATGTCA AACTGGATCC GGTGGTGACT TTCCTGTCGC TTCGCAAGCA GTTTTGA
|
|---|
| Protein sequence | MKIIASTLTC FAVATLSAGV HAQAFTNSPS PWSIGVGAVH LKFHPSADVS FAGNPVPGGA
VTVGSDTVLG VEIGYAVTPN WTARLDVGSP VETDFGGAGT LSPLGKLGSV KGGPAILTMT
YSPGMLGPIR PFFGGGLTYL RVFSTKDGAV QNLKVDDGLG TALTIGADWP LSDGYSIGFS
VQKLFLKVKA TGTAGGAPVR ADVKLDPVVT FLSLRKQF
|
|---|
| |