Gene Aave_4736 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_4736 
Symbol 
ID4666491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp5283028 
End bp5284593 
Gene Length1566 bp 
Protein Length521 aa 
Translation table11 
GC content69% 
IMG OID639825929 
Productspermidine synthase 
Protein accessionYP_973042 
Protein GI120613364 
COG category[R] General function prediction only 
COG ID[COG4262] Predicted spermidine synthase with an N-terminal membrane domain 
TIGRFAM ID[TIGR00417] spermidine synthase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCGCCG CCGCTCCCCT CCCATCCCCT CCGCAGCCCG CCCCCCGGCC TCTCGATATC 
GCGCTGCTCG CCAGCGTGTT CGTGGTGGCC GCCTGCGGCC TGCTCTATGA ACTCGTCGCG
GGCGCGCTCG CCTCGTATGT GCTGGGCGAC TCGGTGCTGC AGTTCTCCAC CATCATCGGC
ACCTACCTGT TCGCGATGGG CGTGGGCTCG TGGCTGTCGC GGTATTTCGA GCGCCAGCTG
CCCGCGCATT TCCTGCGGAT CGAGCTGCTG GTGGCGGTGG TCGGCGGGGC GCTGCCCGCG
GTGCTCTTCC TGGCCAATGC CTACGTGCCT GGTGCCTTCC GGCTGCTGCT CTACGGCATG
GTGCTGCTGG TCGGCATGCT GGTGGGGCTG GAGATCCCGC TGGTGATGCG CATCCTCAAG
CGCAACGTGG CGCTCAAGGA CCTGGTGTCG CAGGTGCTCA CGTTCGATTA CCTCGGCGCG
CTCGCGGTGT CGCTCGCGTT CCCGCTGCTG CTGGTGCCGC ACCTGGGGCT GGTGCGCACG
GGGCTGCTGT TCGGCATCTT CAACGCGGTG GTGGCGGTCT GGGCGCTGTG GCTCTTCCGG
CACGAGCTGC GGCGCTTGCG GGCGCATGCG CTGGCGTGCG CGGCCGTGCT CGGGGCGCTG
CTGGCCGGCT TCGCGGGGGC CGAGCACATC ACCCGCCTGG CGGAAGACCA TTTCTACCAG
GACCGCATCG TCATCGCCAG CGCCTCGCCC TACCAGCGCA TCGTGGTCAC GCACGGCCGC
TCGGGCTACC GGCTGTTCCT GAACGGCAAC CTGCAGTTCG CCGAGCGCGA CGAATACCGC
TACCACGAGG CCCTGGTGCA CCCGGCGATG TCCGCCCACG GGGCGCCGAA ACGCGTGGCG
GTGCTCGGTG GCGGCGACGG CATGGCGGTG CGCGAGATCC TCAAGTACCC CTCGGTCGAA
TCGGTCACGC TGGTGGAACT CGATCCGGCC ATGACGCGGC TCTTCCGCAC CGATCCGGCG
CTGGTGCGGC TCAACGCCGG AGCCCTCAAC GATCCGCGGG TGCGCATCGT CAACACGGAT
GCCTTCCAGT GGCTGCAGCA GGGGGGCAGC GGGGAGTCGG CCGGTTTCGA CGTGATCGTG
GTGGACTTTC CCGATCCCAC CAACTTCGCG ATCGGCAAGC TCTACACGAA CAGCTTCTAT
GCGCTGCTCG AACAGCGCCT CTCGGCGAGC GGCTATGCGG TGGTGCAGAC CACCTCGCCG
CTGGTGGCCC GCCAGAGTTT CTGGACCGTG GTGCAGACCG TCGAATCGGT GGGCCTGGCC
ACGGCGCCGT ACCACGTGCA CGTGCCGAGC TTCGGCGAAT GGGGTTTCGT CATCGCCAGC
CGGCGGCCGT GGCGCCTGCC GGAGCGCCTG CCCGGGGGGC TGCGGTTCCT GTCGGTGCCC
ACGCTGCCCC TGCTGTTCGA CTTCCCCCTG GACATGGCCC GGGTGCCGGC GGAAGTGAAC
CGCCTCTCGA ACCAGGTGCT GGTGCACACC TACGAGCAGG AGTGGGGCAA GGTGGCGGCG
CACTGA
 
Protein sequence
MTAAAPLPSP PQPAPRPLDI ALLASVFVVA ACGLLYELVA GALASYVLGD SVLQFSTIIG 
TYLFAMGVGS WLSRYFERQL PAHFLRIELL VAVVGGALPA VLFLANAYVP GAFRLLLYGM
VLLVGMLVGL EIPLVMRILK RNVALKDLVS QVLTFDYLGA LAVSLAFPLL LVPHLGLVRT
GLLFGIFNAV VAVWALWLFR HELRRLRAHA LACAAVLGAL LAGFAGAEHI TRLAEDHFYQ
DRIVIASASP YQRIVVTHGR SGYRLFLNGN LQFAERDEYR YHEALVHPAM SAHGAPKRVA
VLGGGDGMAV REILKYPSVE SVTLVELDPA MTRLFRTDPA LVRLNAGALN DPRVRIVNTD
AFQWLQQGGS GESAGFDVIV VDFPDPTNFA IGKLYTNSFY ALLEQRLSAS GYAVVQTTSP
LVARQSFWTV VQTVESVGLA TAPYHVHVPS FGEWGFVIAS RRPWRLPERL PGGLRFLSVP
TLPLLFDFPL DMARVPAEVN RLSNQVLVHT YEQEWGKVAA H