| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4663 |
|---|
| Symbol | |
|---|
| ID | 4669860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 5202214 |
|---|
| End bp | 5203398 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 639825859 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_972972 |
|---|
| Protein GI | 120613294 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGAC TGCGTTCACG CCCCTCCCTG CTGGCCCTGT CGGCCGCCTG CCTCGCCGCT
GCCGCCGGCG GCGCCCTCGT GCTGGCCACA CCCGGCGCCT CCCGTGCCGA AGCCGCCAGG
GACAAGGACG CCGCGGCGAC CGCGCCCCGG CCGGCGCTCA CCGTGACCAC CACCACGCCC
CGGCGCGAAT CGCTCGCCGC GCGGCTTCCT GCCAACGGCA ACGTCGCCGC GTGGCAGGAA
GCGAGCATCG GCACCGAGAG CAACGGTTTG CGGCTGACCG AGGTACGGGT GAACGTGGGC
GACACCGTGC GCGCGGGCCA GGTGCTCGCA GTCTTCTCCG CCGACTCGGT GCAGGCCGAG
CTGGCCCAGA GCCGCGCCAG CCTGCTGGAA GCGCGCGCGA GCGCCGCCGA GGCCGCGGCC
AACGCCGAGC GCGCCCGCAC GCTGCAGGCC TCGGGCGCCC TGAGCCAGCA ACAGATCCAG
CAATACACCA CCGCCAGCGA AACCGCCGCC GCGCGCGTGG AGGCCGCGCA GGCCGCGCTC
TCCGCGCAGC AACTGCGCCT GAAGCACACC CAGGTGCTCG CACCCGATAG CGGCGTCATT
TCCGCGCGCA CGGCCACCGT GGGCTCGGTG GTGGGCGCCG GTACCGAACT GTTCCGGATG
GTGCGCAAGG GCCGCCTCGA GTGGCGCGCC GAAGTCACCT CCAGCGAACT GCCGCGCGTG
CGGCCCGGCA TCCGCGCCCG CGTCACCGCG GCGAGCGGCG CCGAAGTGGA AGGCACCGTG
CGCGTGGTGG CACCCACGGT GGACCCGCAG TCGCGCAACG CCCTCGTCTA TGTCGATCTG
CCCGCCCATC CCGACATCCG GGCCGGCATG TTCGCGCGCG GCGATTTCCT GCTCGCGCAG
CGCGACACCC TCACCGTCCC GCAGTCGGCC GTGGTGGTGC GCGACGGCTT CACGGCCGTG
TTCGAGGTCG GCGAGGGCGG CCGCGTGGCG ATGCGCCAGG TGAAGACCGG CCAGCGCACG
GGCGACCGGG TGGAGATCCT CTCGGGACTG CAGGAGCGCG CCACCCTCGT GGAACGCGGC
GGCGCGTTCC TCAACGACGG CGACACCGTG CGCGTCGAGG CATCCGGGGC GGCCGCGCCC
GCCGCCGCCG CATCGACCGC GAAGAGCGCC GGCGCCGCGC GATAG
|
|---|
| Protein sequence | MLRLRSRPSL LALSAACLAA AAGGALVLAT PGASRAEAAR DKDAAATAPR PALTVTTTTP
RRESLAARLP ANGNVAAWQE ASIGTESNGL RLTEVRVNVG DTVRAGQVLA VFSADSVQAE
LAQSRASLLE ARASAAEAAA NAERARTLQA SGALSQQQIQ QYTTASETAA ARVEAAQAAL
SAQQLRLKHT QVLAPDSGVI SARTATVGSV VGAGTELFRM VRKGRLEWRA EVTSSELPRV
RPGIRARVTA ASGAEVEGTV RVVAPTVDPQ SRNALVYVDL PAHPDIRAGM FARGDFLLAQ
RDTLTVPQSA VVVRDGFTAV FEVGEGGRVA MRQVKTGQRT GDRVEILSGL QERATLVERG
GAFLNDGDTV RVEASGAAAP AAAASTAKSA GAAR
|
|---|
| |