| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4649 |
|---|
| Symbol | |
|---|
| ID | 4667646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 5176173 |
|---|
| End bp | 5177897 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639825845 |
|---|
| Product | protein of unknown function DUF894, DitE |
|---|
| Protein accession | YP_972958 |
|---|
| Protein GI | 120613280 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCCC AGCCACCCCA CGACAGTTCC CCCTCCACAT CTTTGCCCCC CGGCCGCCTG
ATCGAAGATC CGGCCGCCAC GCCTGCCGCG CAGTCGGCTG CGGCCGCCGA GGCCGCAGCG
GCCGCGCAGC TCGGCCAGGA CGCCGCACGG CGTGCCGAGC TCTCTCCCCT GGCCCCGCTC
GGGGTACCGG TGTTCCGCAT GCTGTGGCTC ACCTGGCTCG CGGCCAATAC CTGCATGTGG
ATGAACGACG TCGCGGCCGC GTGGCTGATG ACGACGCTCA CCACCTCGCC CGTGCTGGTG
GCGCTGGTGC AGACGGCCTC GACGCTGCCG GTGTTCCTGC TGGGGCTGCC CAGTGGCGCG
CTGGCGGACA TCCTGGACCG GCGGCGGTAT TTCATCGCCA CGCAGTTCTG GGTGGCCGCG
GTGGCGCTGG TGCTGTGCCT GGCGATCCTC GCGGGCGGAA TGACGGCGCC GCTGCTGCTG
GGCCTGACCT TCGCCAACGG CATCGGCCTG GCGATGCGGT GGCCGGTGTT CGCGGCCATC
GTGCCGGAAC TGGTCAGCCG CGCGCAGCTG CCCGCGGCAC TCGCGCTCAA CGGCGTGGCC
ATGAATGCCT CGCGCATCGT TGGCCCGCTG CTGGCCGGCG CGATCATCGC GAGCGCAGGC
AGCGCCTGGG TGTTCGTGCT CAATGCCGTG CTGTCGGTGA TCGCAGGCTT CACGATCATG
CGCTGGAAGC GCACGCACGT GCCCAATCCG CTGGGCCGCG AGCGGCTCGG CAGCGCGATG
CGCGTGGGCG TGCAGTTCGT GCGGGAGTCG CCGCGCATGC GCGCCGTGCT CTGGCGCATC
TCGATCTTCT TCCTGCACGC CACGGCCCTG CTCGCGCTGC TGCCGCTGGT GGCGCGCGAT
CTGGAGGGTG GCGGCGCGGG CACCTTCACG CTGCTGCTGG CATCGATGGG GGCGGGCGCC
ATCGCGGCGG CGATGTTCCT GCCGCGGCTG CGCCAGGCCA TGCCGCGCGA CACGCTGGTG
GGCCGCGGGG CGCTGCTGCA GGCGCTCGCC ACCTCGGTGG TCGCGATCGC GCCGAACGTC
TATGTGGCCG TGCCGGCGAT GGTGGTGGGC GGCATGGCCT GGATCACCAC CGCGAATTCG
TTGAGCGTGT CGGCGCAGCT GGCGCTGCCG AACTGGGTGC GCGCCCGCGG CATGTCGATC
TACCAGATGG CGATCATGGG CGCCACGGCG GCCGGCGCGG CCTTCTGGGG GCAGGTGGCG
TCGGTGACCA GCGTGCACGT GAGCCTGGCG CTCGCCGCGC TCACCGGCAC CGCGGCCATG
GCCCTGGTGC AGCGCACCGT GGCGGATCGC TCGATGGAGG AGGATCTCAG CCCTTCACGG
GCCTTCAAGG TGCCGACCGC CCCGACGACG CCCGAGCAAG GGCACGTGGT GGTGACCATC
GAATACGTGA TCGACCCGGC CCGGGCCGCG GAATTCCGCG CGACGATGCG GGAGAGCCGC
CGCAGCCGCC TGCGCCAGGG CGCGCTCGAC TGGCAGTTGC AGCACGACAT CGCCGACCCG
AGCCGCTACG TGGAGCGCAT CGTGGACGAG TCCTGGACGG AACACCTGCG GCGCTTCGAT
CGCGTCACCG CCTCGGATGT GGCGCTGCGC GACCGCAAGC TGGCATTCCA CGTGGCCGAT
GCGCCTCCGG TGGTGACGCG CTACCTGGTC GAGCTGGAGC GCTGA
|
|---|
| Protein sequence | MPPQPPHDSS PSTSLPPGRL IEDPAATPAA QSAAAAEAAA AAQLGQDAAR RAELSPLAPL
GVPVFRMLWL TWLAANTCMW MNDVAAAWLM TTLTTSPVLV ALVQTASTLP VFLLGLPSGA
LADILDRRRY FIATQFWVAA VALVLCLAIL AGGMTAPLLL GLTFANGIGL AMRWPVFAAI
VPELVSRAQL PAALALNGVA MNASRIVGPL LAGAIIASAG SAWVFVLNAV LSVIAGFTIM
RWKRTHVPNP LGRERLGSAM RVGVQFVRES PRMRAVLWRI SIFFLHATAL LALLPLVARD
LEGGGAGTFT LLLASMGAGA IAAAMFLPRL RQAMPRDTLV GRGALLQALA TSVVAIAPNV
YVAVPAMVVG GMAWITTANS LSVSAQLALP NWVRARGMSI YQMAIMGATA AGAAFWGQVA
SVTSVHVSLA LAALTGTAAM ALVQRTVADR SMEEDLSPSR AFKVPTAPTT PEQGHVVVTI
EYVIDPARAA EFRATMRESR RSRLRQGALD WQLQHDIADP SRYVERIVDE SWTEHLRRFD
RVTASDVALR DRKLAFHVAD APPVVTRYLV ELER
|
|---|
| |