Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_4644 |
Symbol | secD |
ID | 4668454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 5168598 |
End bp | 5170496 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639825840 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_972953 |
Protein GI | 120613275 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGTT ATCCGGTCTG GAAGTACGCG ATCCTCGTGA TCGTGCTGCT CGTGGGGATC CTCTATTCCC TGCCCAATGT GTTCGGCGAG GCGCCCGCGG TGCAGGTCTC TTCGGCCAAG GCGTCGGTCA AGGTCGATGC CTCGCTGCAG CGGCGCGTCG AAGAGGCGCT GCAGGGTGCG GGCATCACAC CCGACGTGGT GAGCTTGGAC GGCAATTCGG TGCGTGCCCG CTTCGACACG CCCGACACGC AGCTCAAGGC CAAGGACGTG ATCCAGAAGG CCCTGGTGCC CGACGCGGCC GATCCGCAGT ACATCGTCGC GCTGAACCTC GTCTCGCGCT CGCCCGCCTG GCTCACGGCG CTGCATGCGC AACCCGTCTA TCTGGGCCTG GACCTGCGCG GCGGCGTGCA CTTCATGCTG CAGGTGGACA TGCAGGCGGC GCTCACGAAG AAGGCCGAGT CCTTCGCGGG CGACCTGCGC ACCTTCATGC GCGACCGCAA CATCCGCCAC GGCGGCATCA GCCGCGACGG CCAGACCATC GAGGTGCGCC TGCGCGACGA GGCGGCCGCC ACGGCCACGC GCAATCTCAT CTCCGACCAG TTCCCCGACC TCGTGGCCAC CTCCAGCCCG GGCGGCGACG GCGTGATCGT GCGCGCGACC ATCAAGCCCG AAGCCCTGCG CAAGGTGCAG GACCAGGCGC TGAAGCAGAA CATCACCACG CTGCACAACC GGATCAACGA ACTCGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCACG GACCGCATCG TCGTGCAGTT GCCCGGCGTG CAGGACACGG CCAAGGCCAA GGACATCCTG GGCCGCACCG CCACGCTCGA GGTGCGCATG GTGGACGAGA GCACGGAGGC GCGGGGCGCC GAGCGGGGCT CGGGCCCGGT GCCGTTCGGC AGCGAGCGCT ACCCCGACCG CAACGGCCAG TTCATCATCG TCAAGAAGCA GGTCATCCTG ACGGGCGAGA ACCTGACGGA CGCGCAGCCC GGCTTCGACG GCCAGACCCA GGAGCCGACC GTCAACCTGA CGCTCGACGC CAAGGGCGCG CGCATCTTCA AGGACATCAC GCGCGAGAAC ATCGGCAAGC GCATGGCCAT CGTGCTCTTC GAGAAGGGCA AGGGCGAGGT CGTGACGGCC CCGGTGATCC GCTCCGAGAT CGGCGGCGGC CGCGTGCAGA TCTCCGGCCG CATGACCACG GCCGAGGCCA ACGACACCTC GCTGCTGCTG CGCGCCGGCT CGCTGGCCGC GCCCATGGAG ATCATCGAGG AATTCACCAT CGGCCCCAGC CTGGGCGCCG ACAACATCAG CCGCGGCATC CACAGCGTGG TCTGGGGCAT GGTGGCCATC GCCGTGTTCA TGTGCGTGTA CTACGCGCTC TTCGGCGTGT TCTCCACCAT CGCCCTGTCG GTGAACGTGC TCATGCTGAT CGCCGTGCTG TCCATGCTGC AGGCCACGCT CACGCTGCCC GGCATCGCCG CCATGGCGCT CGCGCTGGGC GTCGCCATCG ATTCGAACGT GCTGATCAAT GAGCGCATCC GCGAGGAACT GCGCGCGGGC GTCGCGCCGC AGGCGGCCAT CCATGCGGGC TACGAACGCG CCTGGGCGAC CATCCTCGAC TCGAACGTGA CCACGCTCAT CGCCGGCCTC GCGCTGCTGG CCTTCGGATC GGGTCCCGTG CGCGGCTTCG CCGTGGTGCA CTGCCTGGGC ATCCTGACCA GCATGTTCTC GGCCGTGTTC TTCTCGCGCG GCCTGGTGAA CCTCTGGTAT GGCCGCAAGA AGAAGCTCAA GAGCGTGTCC ATCGGCCAGG TGTGGAAGCC CGGCCCCGGC ACTCCGCAGG TGCCCTCCGC TCCGGCCAAG ACGAACTGA
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Protein sequence | MNRYPVWKYA ILVIVLLVGI LYSLPNVFGE APAVQVSSAK ASVKVDASLQ RRVEEALQGA GITPDVVSLD GNSVRARFDT PDTQLKAKDV IQKALVPDAA DPQYIVALNL VSRSPAWLTA LHAQPVYLGL DLRGGVHFML QVDMQAALTK KAESFAGDLR TFMRDRNIRH GGISRDGQTI EVRLRDEAAA TATRNLISDQ FPDLVATSSP GGDGVIVRAT IKPEALRKVQ DQALKQNITT LHNRINELGV AEPVIQQQGT DRIVVQLPGV QDTAKAKDIL GRTATLEVRM VDESTEARGA ERGSGPVPFG SERYPDRNGQ FIIVKKQVIL TGENLTDAQP GFDGQTQEPT VNLTLDAKGA RIFKDITREN IGKRMAIVLF EKGKGEVVTA PVIRSEIGGG RVQISGRMTT AEANDTSLLL RAGSLAAPME IIEEFTIGPS LGADNISRGI HSVVWGMVAI AVFMCVYYAL FGVFSTIALS VNVLMLIAVL SMLQATLTLP GIAAMALALG VAIDSNVLIN ERIREELRAG VAPQAAIHAG YERAWATILD SNVTTLIAGL ALLAFGSGPV RGFAVVHCLG ILTSMFSAVF FSRGLVNLWY GRKKKLKSVS IGQVWKPGPG TPQVPSAPAK TN
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