Gene Aave_4644 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_4644 
SymbolsecD 
ID4668454 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp5168598 
End bp5170496 
Gene Length1899 bp 
Protein Length632 aa 
Translation table11 
GC content68% 
IMG OID639825840 
Productpreprotein translocase subunit SecD 
Protein accessionYP_972953 
Protein GI120613275 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCGTT ATCCGGTCTG GAAGTACGCG ATCCTCGTGA TCGTGCTGCT CGTGGGGATC 
CTCTATTCCC TGCCCAATGT GTTCGGCGAG GCGCCCGCGG TGCAGGTCTC TTCGGCCAAG
GCGTCGGTCA AGGTCGATGC CTCGCTGCAG CGGCGCGTCG AAGAGGCGCT GCAGGGTGCG
GGCATCACAC CCGACGTGGT GAGCTTGGAC GGCAATTCGG TGCGTGCCCG CTTCGACACG
CCCGACACGC AGCTCAAGGC CAAGGACGTG ATCCAGAAGG CCCTGGTGCC CGACGCGGCC
GATCCGCAGT ACATCGTCGC GCTGAACCTC GTCTCGCGCT CGCCCGCCTG GCTCACGGCG
CTGCATGCGC AACCCGTCTA TCTGGGCCTG GACCTGCGCG GCGGCGTGCA CTTCATGCTG
CAGGTGGACA TGCAGGCGGC GCTCACGAAG AAGGCCGAGT CCTTCGCGGG CGACCTGCGC
ACCTTCATGC GCGACCGCAA CATCCGCCAC GGCGGCATCA GCCGCGACGG CCAGACCATC
GAGGTGCGCC TGCGCGACGA GGCGGCCGCC ACGGCCACGC GCAATCTCAT CTCCGACCAG
TTCCCCGACC TCGTGGCCAC CTCCAGCCCG GGCGGCGACG GCGTGATCGT GCGCGCGACC
ATCAAGCCCG AAGCCCTGCG CAAGGTGCAG GACCAGGCGC TGAAGCAGAA CATCACCACG
CTGCACAACC GGATCAACGA ACTCGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCACG
GACCGCATCG TCGTGCAGTT GCCCGGCGTG CAGGACACGG CCAAGGCCAA GGACATCCTG
GGCCGCACCG CCACGCTCGA GGTGCGCATG GTGGACGAGA GCACGGAGGC GCGGGGCGCC
GAGCGGGGCT CGGGCCCGGT GCCGTTCGGC AGCGAGCGCT ACCCCGACCG CAACGGCCAG
TTCATCATCG TCAAGAAGCA GGTCATCCTG ACGGGCGAGA ACCTGACGGA CGCGCAGCCC
GGCTTCGACG GCCAGACCCA GGAGCCGACC GTCAACCTGA CGCTCGACGC CAAGGGCGCG
CGCATCTTCA AGGACATCAC GCGCGAGAAC ATCGGCAAGC GCATGGCCAT CGTGCTCTTC
GAGAAGGGCA AGGGCGAGGT CGTGACGGCC CCGGTGATCC GCTCCGAGAT CGGCGGCGGC
CGCGTGCAGA TCTCCGGCCG CATGACCACG GCCGAGGCCA ACGACACCTC GCTGCTGCTG
CGCGCCGGCT CGCTGGCCGC GCCCATGGAG ATCATCGAGG AATTCACCAT CGGCCCCAGC
CTGGGCGCCG ACAACATCAG CCGCGGCATC CACAGCGTGG TCTGGGGCAT GGTGGCCATC
GCCGTGTTCA TGTGCGTGTA CTACGCGCTC TTCGGCGTGT TCTCCACCAT CGCCCTGTCG
GTGAACGTGC TCATGCTGAT CGCCGTGCTG TCCATGCTGC AGGCCACGCT CACGCTGCCC
GGCATCGCCG CCATGGCGCT CGCGCTGGGC GTCGCCATCG ATTCGAACGT GCTGATCAAT
GAGCGCATCC GCGAGGAACT GCGCGCGGGC GTCGCGCCGC AGGCGGCCAT CCATGCGGGC
TACGAACGCG CCTGGGCGAC CATCCTCGAC TCGAACGTGA CCACGCTCAT CGCCGGCCTC
GCGCTGCTGG CCTTCGGATC GGGTCCCGTG CGCGGCTTCG CCGTGGTGCA CTGCCTGGGC
ATCCTGACCA GCATGTTCTC GGCCGTGTTC TTCTCGCGCG GCCTGGTGAA CCTCTGGTAT
GGCCGCAAGA AGAAGCTCAA GAGCGTGTCC ATCGGCCAGG TGTGGAAGCC CGGCCCCGGC
ACTCCGCAGG TGCCCTCCGC TCCGGCCAAG ACGAACTGA
 
Protein sequence
MNRYPVWKYA ILVIVLLVGI LYSLPNVFGE APAVQVSSAK ASVKVDASLQ RRVEEALQGA 
GITPDVVSLD GNSVRARFDT PDTQLKAKDV IQKALVPDAA DPQYIVALNL VSRSPAWLTA
LHAQPVYLGL DLRGGVHFML QVDMQAALTK KAESFAGDLR TFMRDRNIRH GGISRDGQTI
EVRLRDEAAA TATRNLISDQ FPDLVATSSP GGDGVIVRAT IKPEALRKVQ DQALKQNITT
LHNRINELGV AEPVIQQQGT DRIVVQLPGV QDTAKAKDIL GRTATLEVRM VDESTEARGA
ERGSGPVPFG SERYPDRNGQ FIIVKKQVIL TGENLTDAQP GFDGQTQEPT VNLTLDAKGA
RIFKDITREN IGKRMAIVLF EKGKGEVVTA PVIRSEIGGG RVQISGRMTT AEANDTSLLL
RAGSLAAPME IIEEFTIGPS LGADNISRGI HSVVWGMVAI AVFMCVYYAL FGVFSTIALS
VNVLMLIAVL SMLQATLTLP GIAAMALALG VAIDSNVLIN ERIREELRAG VAPQAAIHAG
YERAWATILD SNVTTLIAGL ALLAFGSGPV RGFAVVHCLG ILTSMFSAVF FSRGLVNLWY
GRKKKLKSVS IGQVWKPGPG TPQVPSAPAK TN