| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4530 |
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| Symbol | |
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| ID | 4667171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 5034124 |
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| End bp | 5038359 |
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| Gene Length | 4236 bp |
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| Protein Length | 1411 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639825719 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_972841 |
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| Protein GI | 120613163 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCTC TACTCGACCT GTTCAAGCAA TTCACGCCGG ACGAGCATTT CGATGCCATC
CGCATCGGCA TGGCGTCGCC GGAGAAGATC CGTTCCTGGT CCTTCGGCGA GGTGAAGAAG
CCCGAGACGA TCAACTACCG CACGTTCAAG CCCGAGCGCG ACGGCCTGTT CTGCGCCAAG
ATCTTCGGCC CGATCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTGAAGCAC
CGCGGCGTGA TCTGCGAGAA GTGCGGCGTG GAAGTGACCC AGACCAAGGT GCGCCGCGAG
CGCATGGGCC ACATCGACCT GGCCGCGCCC TGCGCGCACA TCTGGTTCCT GAAGTCGCTG
CCGTCGCGTC TGGGCCTGGT GCTCGACATG ACGCTGCGCG ACATCGAGCG CGTGCTGTAT
TTCGAAGCCT ACGTGGTGAC CGACCCTGGC ATGACCCCGC TGAAGAAGTT CGGGATCATG
TCCGAGGACG ACCATGACGC GAAGCGCAAG GAATACGGCG ACGAGTTCAT CGCCAAGATG
GGCGCCGAAG GCATCAAGGA CCTGCTCGAA GGCATCGACA TCGATCTGGA GATCGAGAAG
CTGCGCGGCG ACCTGACCGG CTCCGAAGTC AAGGTGAAGA AGAACGCCAA GCGCCTGAAG
GTGCTGGAAG CGTTCAAGAA GTCCGGCATC AAGCCCGAGT GGATGGTGCT GGACGTGCTG
CCCGTGCTGC CGCCGGACCT GCGTCCGCTG GTGCCGCTGG ACGGCGGCCG CTTCGCGACC
TCCGACCTGA ACGACCTCTA TCGCCGCGTC ATCAACCGCA ACTCGCGCCT GCGCCGCCTG
CTGGAGCTGA AGGCTCCGGA GATCATCGCG CGCAACGAGA AGCGGATGCT GCAGGAAGCC
GTCGATTCGC TGCTGGACAA CGGCCGCCGC GGCAAGGCGA TGACGGGCGC GAACAAGCGC
GCGCTGAAGT CGCTGGCAGA CATGATCAAG GGCAAGTCCG GCCGCTTCCG CCAGAACCTG
CTGGGCAAGC GCGTCGACTA CTCCGGCCGT TCCGTGATCA CCGTGGGCCC GACGCTCAAG
CTGCACCAGT GCGGCCTGCC GAAGCTGATG GCCCTGGAAC TGTTCAAGCC CTTCATCTTC
TCGCGCCTCG AGCAGATGGG CATCGCCACG ACCATCAAGG CCGCGAAGAA GGAAGTCGAA
TCCGGCACGC CGGTGGTCTG GGACATCCTG GAAGAGGTCA TCAAGGAGCA TCCGGTCATG
CTGAACCGTG CTCCGACGCT GCACCGCCTG GGCATCCAGG CCTTCGAGCC GATCCTGATC
GAAGGCAAGG CCATCCAGCT GCACCCGCTC GTCTGCGCGG CCTTCAACGC CGACTTCGAC
GGTGACCAGA TGGCCGTCCA CGTGCCGCTG TCGGTGGAAG CGCAGATGGA AGCCCGCACG
CTGATGCTGG CCTCCAACAA CGTGCTGTTC CCCGCTTCCG GCGAGCCTTC CATCGTGCCT
TCGCAGGACG TGGTGCTGGG CCTCTACCAC GCCACCCGCG ACAAGATCAA CGGCAAGGGC
GAGGGCCTGG TGTTCGCCGA CACGGGCGAA GTCCAGCGCG CGCTGGACGC CGGCCAGGTC
GAGCTGCACG CCAAGATCAG CGTGCGCCTG ACCGAATGGA CCAAGGACAA GGCGTCCGGC
GAGTTCGTGC CCTCGACCTC GCTGGTCGAT ACGACCGTGG GCCGTGCGCT GCTGTCGGAG
ATCCTGCCCA AGGGCCTGCC CTTCAGCAAC ATCAACAAGG CGCTGAAGAA GAAGGAAATC
TCCAAGCTCA TCAACGTGAG CTTCCGCAAG TGCGGCCTGA AGGAAACCGT GGTGTTCGCG
GACAAGCTGC TGCAGAACGG TTTCCGCCTG GCCACGCGCG CCGGCTTCTC CGTGGCGATC
GACGACATGC TCGTGCCGCC GCAGAAGACC GAGATCCTGG CCCGTGCCGA AGCCGAGGTG
AAGGAGATCG AGCAGCAGTA CGTCTCCGGT CTCGTGACCG CCGGCGAGCG CTACAACAAG
GTGGTGGACA TCTGGGGCAA GGCCGGCGAC GACGTGTCCA AGGTGATGAT GGACCAGCTC
AAGGTCGAGA AGACCACCGA CCGCCACGGC AAGGAAGTGA ACCAGGAGTC CTTCAACGCC
ATCTACATGA TGGCCGACTC GGGCGCCCGG GGTTCCGCCG CGCAGATCCG CCAGCTGGCC
GGCATGCGCG GCCTGATGGC CAAGCCGGAC GGCTCCATCA TCGAGACCCC CATCACGGCG
AACTTCCGTG AAGGCCTGAA CGTGCTGCAG TACTTCATCT CCACCCACGG CGCCCGGAAG
GGCCTGGCGG ATACGGCGCT GAAGACCGCG AACTCCGGCT ACCTCACCCG CCGCCTGGTG
GACGTGACGC AGGATCTCGT GGTGACCGAA GAGGACTGCG GCACGACCAA CGGTTCGGTG
ATGCGCGCCA TCGTCGAGGG CGGTGAAGTG ATCGAGTCGC TGCGCGAGCG CGTGCTCGGC
CGCTCCACGG CCGAAGAGGT GCTGCACCCC GAAACCCGCG CCGTGCTGGT GCCGGCCGGC
CAGATGCTGG ACGAAGACAC CCTCGAAGAG CTGGAAGCCG CCGGCGTGGA CGAGGTGAAG
GTGCGCACCG CGCTGACCTG CGAAACCCGC TACGGCCTCT GCGCCAAGTG CTATGGCCGC
GATCTGGGCC GTGGCGGCCT GATCAACCTC GGCGAAGCCG TGGGTGTGAT CGCTGCCCAG
TCCATCGGCG AACCCGGCAC GCAGTTGACC ATGCGTACGT TCCACATCGG TGGTGCCGCG
TCGCGCGCCG CCATCGCATC GACCGTGGAA GCGAAGTCCA ACGGCGTGAT CGGCTTCAAC
GCCACGATGC GCTACGTGAC CAACAGCAAG GGCGAGCTGG TGGTGATCGC GCGCTCGGGC
GAGGTCATCA TCCAGGACGA GCACGGCCGC GAGCGCGAGC GCCACAAGGT GCCGTACGGC
GCGACGCTGA CGGTGAAGGC CGACCAGCAG GTCAAGGCCG GCACGATCCT GGCCAACTGG
GACCCGCTGA CGCGACCGAT CATCACGGAA TTCGCCGGCC AGGTGAAGTT CGAGAACATC
GAGGAAGGCC TCACCGTCGC CAAGCAGGTG GACGATGTGA CCGGCCTGTC CACGCTGGTC
GTGATCGATC CGAAGCGCCG TGGCTCCGCC AAGGTGGTGC GCCCGCAGGT GAAGCTCGTC
GATGCGAACG GCGCCGAGGT GAAGATCCCC GGTACCGACC ACTCGGTGAC GATCGGCTTC
CAGGTCGGCG CGCTGATCCA GGTGCGCGAC GGCCAGGACG TGGGCCCCGG CGAAGTGCTG
GCGCGTATTC CGGTCGAAGG CCAGAAGACC CGCGACATCA CCGGGGGTCT GCCGCGCGTG
GCCGAGCTGT TCGAGGCCCG CTCGCCCAAG GACAAGGGCA TGCTGGCCGA GATCACCGGC
ACGGTGTCCT TCGGCAAGGA AACCAAGGGC AAGGTGCGCC TGCAGATCAC CGATCCGGAC
GGCAAGGTCT GGGACGAGCT GGTGCCCAAG GAAAAGAACG TGCTGGTCCA CGAAGGCCAG
GTGGTGAACA AGGGCGAGCT GATCGTCGAT GGTCCGGCCG ATCCGCAGGA CATCCTGCGC
CTGCTGGGCA TCGAGGAACT GTCGCGCTAC ATCGTCGATG AAGTGCAGGA CGTCTATCGC
CTCCAGGGTG TGAAGATCAA CGACAAGCAC ATCGAGGTGA TCGTTCGCCA GATGCTGCGC
CGCGTCGTGG TCGAGAACCC GGGCGAGTCG GGCTACATCG CCGGCGAGCA GGTCGAGCGT
TCGGAGATCC TCAACACCAA CGAACAGCTG CAGTCCGAGG GCAAGATCCC CGCGACCTAC
AGCAACGTGC TGCTGGGTAT CACGAAGGCA TCGCTGTCCA CCGATTCGTT CATCTCGGCC
GCTTCCTTCC AGGAAACGAC CCGCGTGCTC ACCGAGGCTG CCATCATGGG CAAGCGCGAC
GAGCTGCGTG GCCTGAAGGA GAACGTGATC GTGGGCCGCC TGATCCCGGC GGGTACCGGC
CTGGCCTACC ACCAGGCACG CAAGGCCAAG GAAGCCATGG ACGACGCCGA GCGCCGCGCC
ATCGCCGAGG CCGAGGCTGC CGAGATGGCC ACCACGGGCT CCGACGAAGC TCCGGAAGTC
GAAGGCTCCG GCGTGGAAAG CGGTTCGGCC GAGTAA
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| Protein sequence | MKSLLDLFKQ FTPDEHFDAI RIGMASPEKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIDLAAP CAHIWFLKSL
PSRLGLVLDM TLRDIERVLY FEAYVVTDPG MTPLKKFGIM SEDDHDAKRK EYGDEFIAKM
GAEGIKDLLE GIDIDLEIEK LRGDLTGSEV KVKKNAKRLK VLEAFKKSGI KPEWMVLDVL
PVLPPDLRPL VPLDGGRFAT SDLNDLYRRV INRNSRLRRL LELKAPEIIA RNEKRMLQEA
VDSLLDNGRR GKAMTGANKR ALKSLADMIK GKSGRFRQNL LGKRVDYSGR SVITVGPTLK
LHQCGLPKLM ALELFKPFIF SRLEQMGIAT TIKAAKKEVE SGTPVVWDIL EEVIKEHPVM
LNRAPTLHRL GIQAFEPILI EGKAIQLHPL VCAAFNADFD GDQMAVHVPL SVEAQMEART
LMLASNNVLF PASGEPSIVP SQDVVLGLYH ATRDKINGKG EGLVFADTGE VQRALDAGQV
ELHAKISVRL TEWTKDKASG EFVPSTSLVD TTVGRALLSE ILPKGLPFSN INKALKKKEI
SKLINVSFRK CGLKETVVFA DKLLQNGFRL ATRAGFSVAI DDMLVPPQKT EILARAEAEV
KEIEQQYVSG LVTAGERYNK VVDIWGKAGD DVSKVMMDQL KVEKTTDRHG KEVNQESFNA
IYMMADSGAR GSAAQIRQLA GMRGLMAKPD GSIIETPITA NFREGLNVLQ YFISTHGARK
GLADTALKTA NSGYLTRRLV DVTQDLVVTE EDCGTTNGSV MRAIVEGGEV IESLRERVLG
RSTAEEVLHP ETRAVLVPAG QMLDEDTLEE LEAAGVDEVK VRTALTCETR YGLCAKCYGR
DLGRGGLINL GEAVGVIAAQ SIGEPGTQLT MRTFHIGGAA SRAAIASTVE AKSNGVIGFN
ATMRYVTNSK GELVVIARSG EVIIQDEHGR ERERHKVPYG ATLTVKADQQ VKAGTILANW
DPLTRPIITE FAGQVKFENI EEGLTVAKQV DDVTGLSTLV VIDPKRRGSA KVVRPQVKLV
DANGAEVKIP GTDHSVTIGF QVGALIQVRD GQDVGPGEVL ARIPVEGQKT RDITGGLPRV
AELFEARSPK DKGMLAEITG TVSFGKETKG KVRLQITDPD GKVWDELVPK EKNVLVHEGQ
VVNKGELIVD GPADPQDILR LLGIEELSRY IVDEVQDVYR LQGVKINDKH IEVIVRQMLR
RVVVENPGES GYIAGEQVER SEILNTNEQL QSEGKIPATY SNVLLGITKA SLSTDSFISA
ASFQETTRVL TEAAIMGKRD ELRGLKENVI VGRLIPAGTG LAYHQARKAK EAMDDAERRA
IAEAEAAEMA TTGSDEAPEV EGSGVESGSA E
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