| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4475 |
|---|
| Symbol | |
|---|
| ID | 4668015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 4974048 |
|---|
| End bp | 4976117 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639825665 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_972788 |
|---|
| Protein GI | 120613110 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.191893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0867204 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCG GTCTCAATCT CGCCCAGCTC CAGGCCGTCC ACTACACGGA GGGGCCGTGC
CTCGTGCTGG CCGGCGCCGG CTCGGGCAAG ACGCGCGTGA TCACGATGAA GATCGGCCGG
CTGATCGAGA CCGGCCTGGA GCCGCGCCGC ATCGCGGCCA TCACCTTCAC GAACAAGGCC
GCCGCCGAAA TGCGCGAGCG CGCGCAGCAC CTGATCGGCC GCGCGGCCAA AGATGTTCTG
GTCTGCACCT TCCATGCCCT GGGCGTGCGC ATGGTGCGGG AAGACGGGCA CGTGCTGGGC
CTCAAGCCCC AGTTCAGCAT CCTCGACGCC GACGACGTGA CCGGCATCAT CAAGGACGCG
GCCGGCGGCA CCACCGACAT CGCCACCGCG CGCCAGTGGC AATGGACCAT CAGCGCCTGG
AAGAACGCCG GCCTGGACAG CGCCCAGGCC CTCGCGCAGG CGAAGGACGA CAACGAGCGC
AGCATCGCCG TCATCATGCA GCGCTACGAG GAGCGCCTGA CGGCCTACCA GAGCGTGGAC
TTCGACGACC TGATCGGCAT GCCGCTGCGC CTGCTGCGCG ACTTCCCCGA GGTGCGCGCG
AAGTGGCAGC AGTCGCTGGG CCACGTGCTG GTCGATGAAT ACCAGGACAC CAACGCCACG
CAGTACGAAC TGCTCAAGCT GCTGGTGGGA GAGCGCGGCC GTTTCACCGC CGTGGGCGAC
GACGACCAGT CGATCTACGG CTGGCGCGGC GCCACGCTGG ACAACCTCAA GAAGCTGCCG
GTGGACTACC CGCAGCTCAA GGTCATCAAG CTGGAGCAGA ACTACCGCTC CACCAGCGCC
ATCCTGCGCG CGGCCAACAA CGTCATCCAG CCCAACCCCA AGCTCTTTCC GAAAACGCTG
TTCTCCGAGC TGGGCGAGGG CGAGCCGGTG CGCGTGGTGG ACGCCGACAA CGAGGAGCAC
GAGGCCGAGC GCGCCGTCGC CCGCATCCAG AGCCTGCGCG CCACGCTGAA CCCGCAGCCG
GCGTGGAAGA GCTTCGCCAT CCTCTACCGC GCCAACCACC AGGCCAAGCC GTTCGAGAAG
GCGCTGCGCA AGGCCAACGT GCCCTACAAG GTCTCGGGCG GCACCAGTTT CTTCGACCGC
GCGGAAATCA AGGACCTGTG CGCCTGGTTC CGCCTGTGGA TCAACAACGA CGACGACCCG
GCCTTCCTGC GCGCCATCAC CACGCCCAAG CGCGGCATCG GCCACACCAC GCTGGCCAAG
CTCGGCGAGT TCTCGACGCA GCACAAGGTG AGCATGTTCG GCGCGCTCTT CAACCACATG
CTCGAGGCCG TGCTGCCGCG CAAGGCGCAC GAGAGCGTGA TGGAGTTCGG CCGCTACATC
AACTACCTGG AATACAAGGC GCGGCACACC CATGGCGCCG AGGACGCGCG CACCTTCATG
ACCGACTGGC TGAAGGAGAT CGGCTACGAG CAGTACCTCT ACGACAGCGA GGACAGCGAA
ACGGTGGCCG GCGCACGCTG GACCAACGTG CTCGAATTCT GCGACTGGAT GAGCCAGCGC
GCTGGCGGGC AGATCGACGA CACCGCCGGC GCCGTGGTCG CGAAGGAAAC CAAGAGCCTG
CTGGAAGTGG CGCAGACCAT CGCGCTGCTG TCCACCATCA GCGAGCGCGA GAAGGACGAA
GACCTCGTCA CCCTCTCGAC CCTGCACGCC TCCAAGGGCC TGGAATGGCC GCACGTGATG
CTGGTGGGCG TGACCGAGGG CATGCTGCCC TTCAAGCTCG ACGACGACGA AGGCCGCCAG
CAGAAGGTGA GCGAAGACAC CCTGCAGCGC CTGCAGGAAG AGCGCCGCCT GATGTACGTG
GGCATCACCC GCGCGCAGCG CAGCCTGGCC GTGAGCTGGA CCAAGCGCCG CAAGAAAGGC
CGCGAGATGG TCGCCGCCCA GCCCAGCCGC TTCATCGCCG AGATGGGCCT GGACAAGAAC
ACCGCCCGCG AAGACCCGCG CGAGAAGCTG CGCGCGCTGC GTGCCGAGTT CGCGGCACGC
AAGGCCCAGC CTGCCCCGAC GGCACCATGA
|
|---|
| Protein sequence | MSAGLNLAQL QAVHYTEGPC LVLAGAGSGK TRVITMKIGR LIETGLEPRR IAAITFTNKA
AAEMRERAQH LIGRAAKDVL VCTFHALGVR MVREDGHVLG LKPQFSILDA DDVTGIIKDA
AGGTTDIATA RQWQWTISAW KNAGLDSAQA LAQAKDDNER SIAVIMQRYE ERLTAYQSVD
FDDLIGMPLR LLRDFPEVRA KWQQSLGHVL VDEYQDTNAT QYELLKLLVG ERGRFTAVGD
DDQSIYGWRG ATLDNLKKLP VDYPQLKVIK LEQNYRSTSA ILRAANNVIQ PNPKLFPKTL
FSELGEGEPV RVVDADNEEH EAERAVARIQ SLRATLNPQP AWKSFAILYR ANHQAKPFEK
ALRKANVPYK VSGGTSFFDR AEIKDLCAWF RLWINNDDDP AFLRAITTPK RGIGHTTLAK
LGEFSTQHKV SMFGALFNHM LEAVLPRKAH ESVMEFGRYI NYLEYKARHT HGAEDARTFM
TDWLKEIGYE QYLYDSEDSE TVAGARWTNV LEFCDWMSQR AGGQIDDTAG AVVAKETKSL
LEVAQTIALL STISEREKDE DLVTLSTLHA SKGLEWPHVM LVGVTEGMLP FKLDDDEGRQ
QKVSEDTLQR LQEERRLMYV GITRAQRSLA VSWTKRRKKG REMVAAQPSR FIAEMGLDKN
TAREDPREKL RALRAEFAAR KAQPAPTAP
|
|---|
| |