| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4412 |
|---|
| Symbol | |
|---|
| ID | 4666117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 4905597 |
|---|
| End bp | 4906769 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639825603 |
|---|
| Product | type III secretion exporter |
|---|
| Protein accession | YP_972726 |
|---|
| Protein GI | 120613048 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
|---|
| TIGRFAM ID | [TIGR00328] flagellar biosynthetic protein FlhB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTCCT CCAGCCAAGA CAAACAGCTA CCCGCGACCG AGCGCAAGCT CCAGAAAGCG
CGCGAGGAAG GCCAGGCTGC GCGGTCCCGC GATCTTTCCC ACATCGCCAT CCTCGGCATG
GGCGCGGTCA GCATCTATGC GCTGGCCCCC TCCCTGATCG AGCACCTGCA GCAGGCCATC
GCGCACCACC TCTCGTTCAA CGCAGAGACG GTGCATGCCA CCGGCTCCAT GCTGCAGCGG
CTGCAGGACA TGACCTTCGT CGGCCTGGCC GCGAGCTTCG CCTTCGCCCT GCTGACCACC
GTGGCCACCG TGGCGAGCGC CATCGGCTCG GGCGGCTGGA TCTTCACCTT CAAGCCGGTG
ATGCCCAATT TCACGCGGCT CAACCCGATT TCCGGCTTCG CGAACCTGTT CTCGAAGCAG
CAGATGGTCA CCGTGCTCAA GATGGTGCTG ATGACCGGCA TCCTGGCCGC CGTGGCCTGG
AGCTTCATGA GCACCAGTAT CGAGAAGATC GCGATGCTGG TGCTGCAACC CTCCCCGGTG
GCCCTGCGCT ACGTGGCCGA GTGGATCACC GGCGGCATGG CGCTGCTGCT GCTGGTCGTG
TTCCTCGCGG CCATCATCGA CGTTCCGCTG CAGGCCTTCT TCTTCAAGTC GCGGCAGAAG
ATGTCGCACG AGGAAGTGAA GCAGGAGCAC AAGCAGTCCG AGGGCAGTCC CGAGGTGAAG
GGCCGCCAGC GCCAGCGGGC GCGCGACATC GCCAGCCGCG CCAGCCTGGC CAACGTGCCC
AAGGCCGACT TCGTGGTGAT GAACCCGACC CACTATGCCG TGGCCCTGCG CTACGACGAG
GCCACCATGG GCGCGCCGCA GGTGGTGTCC AAGGGCACGG ACCTGCTGGC GTTCAAGATC
CGCGAACTGG CCAACCAGCA CTCCGTGCCC GTCCTGCAGT CGCCCATGCT GGCCCGCGCC
CTCTACGCCA ATGCCGAGCT GGAGCAGCCC ATTCCCGCCC AGCTCTACGC GGCCGTGGCG
CAGATCCTGG CCTATGTGTA CCGGCTCAAG GCCGCGCTGC GCGGCGAAGG CCGCATGCCC
GACGCCCAAC CCGATCCCTA CGTGCCGCCG GAGCTCGATC CGCTCACGAA GGCCGCCCCA
TCCGACGCTT CCGCTGCAGG TGACGCGCCA TGA
|
|---|
| Protein sequence | MDSSSQDKQL PATERKLQKA REEGQAARSR DLSHIAILGM GAVSIYALAP SLIEHLQQAI
AHHLSFNAET VHATGSMLQR LQDMTFVGLA ASFAFALLTT VATVASAIGS GGWIFTFKPV
MPNFTRLNPI SGFANLFSKQ QMVTVLKMVL MTGILAAVAW SFMSTSIEKI AMLVLQPSPV
ALRYVAEWIT GGMALLLLVV FLAAIIDVPL QAFFFKSRQK MSHEEVKQEH KQSEGSPEVK
GRQRQRARDI ASRASLANVP KADFVVMNPT HYAVALRYDE ATMGAPQVVS KGTDLLAFKI
RELANQHSVP VLQSPMLARA LYANAELEQP IPAQLYAAVA QILAYVYRLK AALRGEGRMP
DAQPDPYVPP ELDPLTKAAP SDASAAGDAP
|
|---|
| |