| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4277 |
|---|
| Symbol | |
|---|
| ID | 4667753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 4739189 |
|---|
| End bp | 4742872 |
|---|
| Gene Length | 3684 bp |
|---|
| Protein Length | 1227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639825463 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_972591 |
|---|
| Protein GI | 120612913 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01451] conserved repeat domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAT CTTCTCCATG GCGGGCGGGC GCTTCGGCGC CGCCCGGCAC CCGCCGCGCC
ATGTTCGCCA CGCCCGCCAG GGCCGCGCGC AGCCTTCACC TCGGCGCCCT CACGGCCGTG
CTGGCGCTGG CCGCCGGCGC GGCCCAGGCC CAGAGCACGG ACGTGCTCGT CAACCAGGAT
GCCGTTCCCG CCTCCGCGTC CGGTCCGGCC GGCGGCACCT TCCACTACGT GGTCAAGGTG
CGCCACAACA CCGGCAGCGC CGCCACCGGC GTGCAACTGA CGGACACGCT GCCGCTGGGC
GCGGTGTTCC GGTCCGTCAC GACCAGCCCG GCCGGTGTGT CCTGCCTGCC GGCCATCGCG
CCCGGCACGA CGATCACGGC AGCGAACCAG GTCGTGCAGT GCGACCTGGG AACCCTGGCG
GTGAACGCCA CCAAGACCGT GGACTTCGAG CTGGTGCTGC CCACCGTGTC CACCAACTGG
ATCAACAGCG CGCGCGTGAC GCGCAACGAG ACCGATTCCG ACCCCAGCAA CGATGCGCTG
GACCGCCGCA TCACCACCAC CGAGGCCGCG GACCTGTCGC TCTCGGCGGC GACCGACCCG
CTCGCGCCCC CGGGCAGTCC GATCGCGCCC GGACAGCCTT ATGCCTACCT CGTGGACGTG
GGCAATCAGG GACCGACCGA CATTCCCGCG GGCGGCCGCG TCCAGGTCTC GTTCAGCGTG
CCCACCGGCA CCGCGGTGAC GCGCGCGGGC GGCACCAATG GCTGGAGCTG CACGCCCGCG
GCGTCGAACG CCTCGCCGGT GGTCTCGCCG GGAGCCCCCG ATCCGGCCAC GGTGGTGACC
TGCTCGCGCG CCGGAGCGCT CGCCGCCGGC GCCGTGGCCC CGCGGCTGCG CGTGGAGGCC
GCGCCCAACG TGACCGGCTC CATCACCACG TCGTTCTCCG TGCAGGGCTA CAAGGACGGC
TCCACGCAAA TGCCCGACGG CCAGCCGTCC AACAACACCG GTACCGCCGA GGTCAACGTC
GCCGGCACGG GCTCGGATGT GTCCGTCACC AAGGCGGTGA GCGGCGCAAC CAGCTACGGG
ATCGGCGATG AGGTGGCCTA CACCCTCACG CCCCGGCTCA ACGGCGGCAT GGCGCTCGAC
GGCGTGCCCG TGCGCGTGGT GGATACGCTG GGCGCGGGCC TGTCCTTCGT GTCCGCTTCC
GGCTCCGGCT GGACCTGCAC GCCCGCGGGC CAGCAGATCA CCTGCGATCT GCCCGCCGCC
ATGGCCTCCA ACTACACCAA CCTGCCGGCG ATCACCGTGC GGGCGCAGGT GCAGCAGACG
GGCACGCTGG CCAACAGCGC GACGGTGGCG ATGACGGGCC GCACGGACCC GAACACCAAC
AACAACACCA CGCCCGACGT GTTCATCACG GCCACCGACG TGTCCGACCT GCAGATCACC
AAGTCCGCGT CCAACTACCA GAACGGGCAG GGCGTGGCCA TTCCCATCGG CCAGACCTAC
CAGTACCGGC TGCGCGTACG CAACCTGGGG CCGCTGGCCG TGCCCGCGAC CTCGGGCGCG
ACGCCGCAGA TCCCTTCCAT GGTGGTGAAC GATTCGGTGC CTGCGGGCGT GACGCTCACG
GGGCTGAACG CGGCCTCCGG TGCGGGATGG TCCTGCAGCG CGCTGCCGCT CGTGGGCCCC
GGCACTTTCA CGTGCGAGCG CGTCGCCGGC CTGGCGGTGA ACAGCAATGC GCCGGACATC
GTGGTGGACG CCGTGCGCAC CACCGCGGGC TCCGCCACCA ACAACGCCTG CGTGAACTTC
AGCCCCGCCA GCGGCGGCAC GCGCCAGGAC CCGTGGATCA ACGACCCCGC CCACGGCATC
AACTGCCAGG GCATCGGCGT GGGCGCCTCC GACCAGACGC CGGGCAGCGA AGTGTCGGCC
GACGTGCGCG TGGTCAAGAC CTTCGACAAG GCCTCGGTGC CGGCGGGCGA CGTGCTCACC
TACACGCTCG TGGTGACCAA CCAGGGCCCG AACCCCGCCA CCAAGGTGAG CGTGCGCGAT
GCGCTGGGCA GCCTGGTGTC GAGCAGCGGC TCGCCGGGTG TCGTGTCGGT GAACACCACG
GCGGGCACCT GCACGCCCTC GGGCGCGACC AACGCCACCT CGTCCACGCT GCTGTGCCAG
CTCGGCACGC TGGCGAGCGG CGCGAGCGCC ACGGTGACCG TGGCCGTGCG GCCCACCGTG
GCCACCACGG CGCAGCGCAG CAACACCGCC ACCGCGTTCT CCGCCGACGT GGTGGACCCG
GTGCTGGGCA ACAACACCTC CACCGTGCAG AGCGAGGTCA CGGCGCGCGT GGACCTCGTC
GCCTCCAAGA CGGTGTCGCC CACGCCGCGC GCCATCTCCG GCGAGCCCGT CACCTACACG
GTGCGCGCGA AGAACAACGG CCCGTCGTCG GCCGAGAACG TCTGGCTGAA GGACACGCTG
CCCGCGGGCA CCGTGCTGAT CGGCACGCCC ACGGCCACCG GGGGCGGCAC CTGCGATCCG
GTGGGCAGCG ACGGCACGCT CAACTGCCGC TGGGGCACCA CGGGCGCGAG CATGCTGCTG
GCGAACGGCG GGCAGTACGA GGTCACCTAC CGCCTGCGGC CCACCACCGC GTGGACGGCC
GGCCAGACGC TGAACAACGA GGTGGAGATC GGCACCGCGA CCGACGAGCC CAACCTGGCC
AACAACCGGG CCCAGGCCCA GGTCGAGCTG ACCCAGCCCG AGCTGGACGT GCTGGTGTCG
ATGGCGCACA GCGCGGACGC CATCGCGCTC GGCGCTGAAA CCACCTACAC CATCACGGTG
AAGAACTCCG GACCTTCGTA CGGTACGAAC GTGGTGATGA CCGACACCTT CCCGGTCACG
CACCCGACCA ACGGCGCCAC CTCGGCCACC TTCGCCTACA CCGGCAACCT GACGGTGGAC
CGGGGCGGCT CCTGCGTGCA GCCCGCCGTG GGCGCGACCT CCGGCAGCGT GGTGTGCACC
TTCCCCGGGC TCGCCAAGGA CGAGGTCGCC ACCATCACGT TCCGCATGAA GGCGCTGAGC
CTGCCGACGG GCGCCGAGTC GGGCACCGTG TTCCACAAGG CCGTGGTGGC GGTGCGCGAG
ACCGAGTTCC TGCGCGGCGG CCAGGACGTG GTGGTGAACA ACACCACCTA CGACCAGACC
TCGACCAAGC GCGACGCGAT CGCCACCGAC CTGTCCCTCA CCAAGACCGG CCCGGACGGC
CCGCTCGCGC CCGGCGCCGA CGTGGACTAC GTGCTCACCG TGCGCAACCT CGGCCCGCTC
ACGAGCCAGG GCGCGCAGGT GATGGACGCG CTGCCCCAGG GCCTCGCCTT CGTGTCGTCC
ACCGACTGCA CGTTCGCGTC CGGCACGGTG AACTGCACCG TCGGCGAACT GCTGTCCGGC
GCGAGCCGCG ACTTCCGCTT CAAGGCGAAG CTCGCGTCGC CCTACGACGG CGCACGGCCG
CTCGTGAACA CCGCCACGCT GGACGCGCCG GGCGACACCA ATCCGGGCAA CAACAGCTCG
TCCAAGACCA CCACGGTGCA GTCGCCGCCC GGCGGAGTGG CCACCATCCC GACGCTGTCG
CAGTGGGGCC TGATCGCGCT GTCGTGCCTG CTCGGCCTGC TGGCCCTGCG CCACTCCACG
CCCGGCCAGC GGCGCGGCCG ATGA
|
|---|
| Protein sequence | MNQSSPWRAG ASAPPGTRRA MFATPARAAR SLHLGALTAV LALAAGAAQA QSTDVLVNQD
AVPASASGPA GGTFHYVVKV RHNTGSAATG VQLTDTLPLG AVFRSVTTSP AGVSCLPAIA
PGTTITAANQ VVQCDLGTLA VNATKTVDFE LVLPTVSTNW INSARVTRNE TDSDPSNDAL
DRRITTTEAA DLSLSAATDP LAPPGSPIAP GQPYAYLVDV GNQGPTDIPA GGRVQVSFSV
PTGTAVTRAG GTNGWSCTPA ASNASPVVSP GAPDPATVVT CSRAGALAAG AVAPRLRVEA
APNVTGSITT SFSVQGYKDG STQMPDGQPS NNTGTAEVNV AGTGSDVSVT KAVSGATSYG
IGDEVAYTLT PRLNGGMALD GVPVRVVDTL GAGLSFVSAS GSGWTCTPAG QQITCDLPAA
MASNYTNLPA ITVRAQVQQT GTLANSATVA MTGRTDPNTN NNTTPDVFIT ATDVSDLQIT
KSASNYQNGQ GVAIPIGQTY QYRLRVRNLG PLAVPATSGA TPQIPSMVVN DSVPAGVTLT
GLNAASGAGW SCSALPLVGP GTFTCERVAG LAVNSNAPDI VVDAVRTTAG SATNNACVNF
SPASGGTRQD PWINDPAHGI NCQGIGVGAS DQTPGSEVSA DVRVVKTFDK ASVPAGDVLT
YTLVVTNQGP NPATKVSVRD ALGSLVSSSG SPGVVSVNTT AGTCTPSGAT NATSSTLLCQ
LGTLASGASA TVTVAVRPTV ATTAQRSNTA TAFSADVVDP VLGNNTSTVQ SEVTARVDLV
ASKTVSPTPR AISGEPVTYT VRAKNNGPSS AENVWLKDTL PAGTVLIGTP TATGGGTCDP
VGSDGTLNCR WGTTGASMLL ANGGQYEVTY RLRPTTAWTA GQTLNNEVEI GTATDEPNLA
NNRAQAQVEL TQPELDVLVS MAHSADAIAL GAETTYTITV KNSGPSYGTN VVMTDTFPVT
HPTNGATSAT FAYTGNLTVD RGGSCVQPAV GATSGSVVCT FPGLAKDEVA TITFRMKALS
LPTGAESGTV FHKAVVAVRE TEFLRGGQDV VVNNTTYDQT STKRDAIATD LSLTKTGPDG
PLAPGADVDY VLTVRNLGPL TSQGAQVMDA LPQGLAFVSS TDCTFASGTV NCTVGELLSG
ASRDFRFKAK LASPYDGARP LVNTATLDAP GDTNPGNNSS SKTTTVQSPP GGVATIPTLS
QWGLIALSCL LGLLALRHST PGQRRGR
|
|---|
| |