| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4247 |
|---|
| Symbol | |
|---|
| ID | 4669023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 4705262 |
|---|
| End bp | 4706449 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 639825433 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_972561 |
|---|
| Protein GI | 120612883 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.897549 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGA TGGCACTGGA TTTCGTCACG CTGCTGGCCG TCACGGCCAC CAACCTGTTC
ATGCTCTCGA TCGCCCTGCC GCTCATCATG GGGCGGGAGG TGAGCCGTGC CGCGCGCTTC
GCGCAGGCCA GCGTGGCGCT GCAGGCCCTG TCCTGGGGCG CCATCATCGC CTCCTCCCGG
CTGTGGGACC AGGCCCTGTC CACGCTCTCC GTCGGTTGCG CGGCGGCGGC GCAATGGGCC
TTGTTCGCGG CCCTGCAGGA ATGGCTGGGG CCACGGCCCG GGCGCCGCTG GCTGCCCTGG
CTGGTCGCCG CGATACCGAT CGGCTACACC CTGGGTTTCG GCAGCTACCC CTTCCGCGTG
GGCTGGGCCA ACCTGCTGCT GGCCGTGCTG CTCGCCACCG TCGCGCGGGC CACGCTCGCG
CCCTGGCGGC CGTCGCCCCG GCACTGGCGC GTGCTGCTGT GCGCCTGCCT CGTCGCCATG
GCCGGCTTCA CGGCCGCGCG CGGCGTGCTC GGCGCCTTCA CCGAAGCGTA TCCGAGCTTC
CGCGCGCCGC ATCCCGTGAA CATCGCCGCC GCGCTCGCCG CCAACGTGAC ACTGGTGCTG
GGCACCATGG CAGTGCTCGT GGCATGGCGC ACCGAGGCCG AGGACAAGCT GCGCGCGCTG
GCCAAGACGG ATGCGCTCAC CGGCGTGCTC AACCGGCGCG GCTTCGACGT GCGGGGCCGC
GCGCTGCTGG CGCATGCGCT GCGGCACGGC CTGCGCGTCA CCGCCGTGAT GCTGGACGTG
GACCACTTCA AGCGCGTGAA CGACACCCAT GGGCACGGCA CGGGCGACCA CGTGCTCGCG
TTCTTCGCGC GGCTGCTGCA GGACGCGACA CGCACGGGCG ACGTGGCGGG CCGCATCGGC
GGCGAGGAGT TCGCCGTTCT GCTCGCGCAT GCGCCGGGCG ACCGCGCCGC CGAGAGCTTC
GACCGCCGGC TGCGCGCGCG GCTGGCCGCC GACAGTCCGC AGGCCGTGGG ATTCCCGGTC
AGCTACAGCG CGGGGGCCGC CACCCTGGAG GCCGGCCTGC CGGACCCCGG CGCCATGGCC
GTCGCCCCGC TGCTCGCGGA CCTCATGGCG CGCGCCGATG CGACTCTCTA CGAGGCCAAG
CGCGCGGGGC GGGGGCGGCT GCAGGTGCAG CAGGGCACCA CAGGCTGA
|
|---|
| Protein sequence | MPPMALDFVT LLAVTATNLF MLSIALPLIM GREVSRAARF AQASVALQAL SWGAIIASSR
LWDQALSTLS VGCAAAAQWA LFAALQEWLG PRPGRRWLPW LVAAIPIGYT LGFGSYPFRV
GWANLLLAVL LATVARATLA PWRPSPRHWR VLLCACLVAM AGFTAARGVL GAFTEAYPSF
RAPHPVNIAA ALAANVTLVL GTMAVLVAWR TEAEDKLRAL AKTDALTGVL NRRGFDVRGR
ALLAHALRHG LRVTAVMLDV DHFKRVNDTH GHGTGDHVLA FFARLLQDAT RTGDVAGRIG
GEEFAVLLAH APGDRAAESF DRRLRARLAA DSPQAVGFPV SYSAGAATLE AGLPDPGAMA
VAPLLADLMA RADATLYEAK RAGRGRLQVQ QGTTG
|
|---|
| |