| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4077 |
|---|
| Symbol | |
|---|
| ID | 4667312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 4528436 |
|---|
| End bp | 4529734 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639825264 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_972392 |
|---|
| Protein GI | 120612714 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.128108 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGG CGCTGCTCTT CGCCGCCTTC CTGGGCATGA TGGCCGCCGG CGTGCCGATC
GGCGCCGCGC TCGGACTGGC CGGCAGCGCC GCCATCGCCA TCGCCAACGC CGACTCGCCC
TGGTTCGGCC TGCTGGCAGT GCCGCAGAAC TTCTATGCCG GGCTCGGCAA ATACCCCCTG
CTCGCCATTC CCATGTTCGT GCTGGTCGGC TCGATATTCG ACCGCTCCGG CGTGGCGCTC
CGCCTCGTGA ACTTCGCGGT GGCCATCGTC GGCCGCGGCC CCGGCATGCT GCCACTCGTG
GCCATCGCGG TGGCGATGTT CCTGGGTGGC ATCTCCGGCT CCGGGCCGGC CAACGCGGCG
GCCGTGGGCG GCGTGATGAT CGCCGCCATG TCGCGCGCGG GCTACCCGGG CTCGTTCTCG
GCCAGCGTCG TCGGCGCGGC GGCGGCCACC GACATCCTGA TCCCGCCGTC GGTCGCCTTC
ATCATCTACT CGGTGCTGGT GCCCGGCGCC CCGGTGCCCG CCCTGTTCGC CGCCGGCATG
GTGCCGGGCG TGCTCGCGGG GATCGCACTC GTCGTGCCCG CGGTGTGGCT GGCGCGCCGC
CACCGCATGG GCGCACTGGA GGCCACCATG CCCCGCCCCC CTTTCTGGAA GAGCCTGCGC
GAAGCTTCCT GGGGCCTGGC CGCGCCGGTG GTCATCCTCG GTGGCATGCG CGCGGGCTGG
TTCACGCCCA CCGAGGCGGC TGTGGTCGCG GTGTTCTACG GCCTTTTCGT GGGCATGTGC
ATCCACCGCA CCATCGGCCT GCGCGACCTG TTCCCGATCC TGCGCGAGGC CGGCGAACTC
TCGGGGGTGA TCCTGCTGGT GGTTTCGCTG GCGGGCATCT TCGCGTTCTC GCTGTCCACG
CTCGGGGTGA TCGACCCCAT CGCCAACGCC ATCGTGCATT CGGGCCTGGG CGAATACGGC
GTACTCGCGC TGCTGATCCT GCTGCTGATC ACCGTGGGCA TGTTCCTGGA CGGCATCTCG
ATCTTCCTGA TCTTCGTGCC GCTGCTTCTG CCCATCATGC AGCACTACCA GTGGAACCCC
GTATGGTTCG GGGTGATCCT CACCCTCAAG GTGGCGCTCG GCCAGTTCAC GCCGCCGCTG
GCCGTGAACC TCATGGTGTC CTGCCGCATC GCGGGCGTGC GCATGGAGTC CACCGTGCGC
TGGGTGGGCC CCATGCTGCT GGCCATGTTC CTCGTGATGG TGGCCGTCAT CGCCTTTCCG
CAACTGGCCC TCTGGCTGCC GGCGCGCCTG GGCTATTGA
|
|---|
| Protein sequence | MIAALLFAAF LGMMAAGVPI GAALGLAGSA AIAIANADSP WFGLLAVPQN FYAGLGKYPL
LAIPMFVLVG SIFDRSGVAL RLVNFAVAIV GRGPGMLPLV AIAVAMFLGG ISGSGPANAA
AVGGVMIAAM SRAGYPGSFS ASVVGAAAAT DILIPPSVAF IIYSVLVPGA PVPALFAAGM
VPGVLAGIAL VVPAVWLARR HRMGALEATM PRPPFWKSLR EASWGLAAPV VILGGMRAGW
FTPTEAAVVA VFYGLFVGMC IHRTIGLRDL FPILREAGEL SGVILLVVSL AGIFAFSLST
LGVIDPIANA IVHSGLGEYG VLALLILLLI TVGMFLDGIS IFLIFVPLLL PIMQHYQWNP
VWFGVILTLK VALGQFTPPL AVNLMVSCRI AGVRMESTVR WVGPMLLAMF LVMVAVIAFP
QLALWLPARL GY
|
|---|
| |