| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3988 |
|---|
| Symbol | |
|---|
| ID | 4669069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 4421957 |
|---|
| End bp | 4422631 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 639825176 |
|---|
| Product | DNA-N1-methyladenine dioxygenase |
|---|
| Protein accession | YP_972304 |
|---|
| Protein GI | 120612626 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3145] Alkylated DNA repair protein |
|---|
| TIGRFAM ID | [TIGR00568] DNA alkylation damage repair protein AlkB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.365574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGAT CATCCGCCAC GACACCCGAT CTCTTCGACG GCGCACCCGC CGGGGACCGC
GCCGCCCCGC TCCCGCTGGG CCCGGGCGCG GCGCTGCTGC GCGGGTTCGC GCTGCCGGTG
GCGGCGACGC TGCGCGAGGA GGTGCTGGCC GTGGCCCGCG CCGCGCCCTG GCGGCACATG
GAAACCCCGG GCGGGCGGGC GATGTCGGTC GCCACCACGT CCTGCGGCCG CCTGGGCTGG
GTGAGCGACC GCCGCGGCTA CCGCTATGCC CCGCTCGACC CTGGCTCCGG CACGGCCTGG
CCCGCCATGC CGGACGCCCT CCGGCGGCTG GCCCGTGAAG CAGCCGCGCA CGCCGGATTC
CCGGATTTCG AGCCCGACAG CTGCCTGGTC AACCGCTACG CCCCCGGCGC GCGCCTGTCG
CTGCACCAGG ACCGGGACGA GCACGACCTG CAGGCGCCCA TCGTGTCGGT GTCGCTCGGG
CTCCCCGCGG TTTTCCTGTG GGGCGGCTTC GCGCGCACCG GCCCGGTGGC GCGCGTGCCG
CTGCAACATG GCGACGTGGT GGTGTGGGGT GGACCGGACC GGCTGCGCTT TCACGGCGTG
CAGCCGGTGA AGGACGGCCT GCATCCGGAA TGGGGCGCCG AACGGGTGAA CCTCACCTTC
CGCAAGGCGG GCTGA
|
|---|
| Protein sequence | MPRSSATTPD LFDGAPAGDR AAPLPLGPGA ALLRGFALPV AATLREEVLA VARAAPWRHM
ETPGGRAMSV ATTSCGRLGW VSDRRGYRYA PLDPGSGTAW PAMPDALRRL AREAAAHAGF
PDFEPDSCLV NRYAPGARLS LHQDRDEHDL QAPIVSVSLG LPAVFLWGGF ARTGPVARVP
LQHGDVVVWG GPDRLRFHGV QPVKDGLHPE WGAERVNLTF RKAG
|
|---|
| |