Gene Aave_3979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_3979 
Symbol 
ID4668562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp4408399 
End bp4410720 
Gene Length2322 bp 
Protein Length773 aa 
Translation table11 
GC content69% 
IMG OID639825168 
ProductABC transporter-related protein 
Protein accessionYP_972296 
Protein GI120612618 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACATC ACCATCCTGC GGACGCCTCG GGTGTCTTGA CGGGCCCCAT CGGGGCCGAA 
CTGCGAGCCA GGCTCGCGCC CCCGGAAAAC GTGCTGGCCG CGCTGGAGGT TGACCTGAGC
GCCGCCCTGC GCTTCGCGCC GGGCCTGCTG ATGCTGACCG CGCAGCGCCT GCTGGCGCGC
GATCCGGAAG GCGGTGTCCG CGACTGGGCG CTGTCGCCGG GCCTGTCGCT GCGGCTGATC
GAGCACGGCG GCGTCGGCAC GCTGGAACTG CACGACGCCA CGCAGCGCCT CGCGCTGTGG
CGCTTCACGC TGGGCCACCA CCCCCAGGCG CTGCTGCTGC AGCAGAAATT CGAGCAACTG
GTGGGGTACC TCTGTGCCTC GGGGGACTCG CCGCGGCAGG CCGGGCCGGA CGACGAGGCG
CGCTGCGAGG CCTGCGGCGC CGTGCTGCCG CCCGATGCGG ACGAGTGCCC CGCCTGCGCA
CGCCAGCAGG CGCCCCAGAC ATCCACCTGG GTGCTGCTGC GGCTGTGGCG CTTCGCGCAT
CCCTACAGGC ACCAGCTTCT GCTGGGCTTC CTGCTCACGC TGGCTTCCAC CGGGGCCACC
CTGGTCGCGC CCTACCTGAC GATTCCCATC GTGGACAGGA TCCTGATCCC GTTCCAGAAC
GGCCAGCGGA TCGACGCGGG CCTGGTGGGC TTCTACCTGG GCGCCCTCCT GCTCTCGGCC
CTGGTGGCCT GGGGACTGGG CTGGGCGCGC ACCTTCGTGC TGGCCAGGGT GTCCGAGCGC
ATCGGCTCGG ACCTGCGCAC CACCACCTAC AAGCACCTGC TGACGCTCTC GCTCGACTAC
TACGGCAGCA AGCGCACGGG CGACCTGATG GCGCGCATCG GCGCGGAGAC GGACCGCATC
AACCTCTTCC TGTCGCTCAA TGCGCTCGAC TTCGCCACCG ACGTGCTGAT GATCGCGATG
ACCTCGGTCA TCCTGTTCTC CATCAATCCC TGGCTGGCGC TGGTCACACT GGTGCCGCTG
CCCTTCATCG CGTGGATGAT CCACCTGGTG CGCGACCGCC TGCGCACGGG CTTCGAGAAA
ATCGACCGCG TCTGGTCCGA GGTGACCAAC GTGCTCGCCG ACACCATCCC GGGCATCCGC
GTGGTCAAGG CCTTCGCCCA GGAAAAGCGC GAGTCCGACC GCTTCGCCCA GGCCAACCTC
GTCAACCTGC AGGCCAACGA CCGGGTGAAC AAGACCTGGT CGCTGTTCAC GCCCACGGTG
ACGCTGCTCA CCGAGGTCGG CCTGCTGATC GTGTGGGGCT TCGGCATCTG GCTGGTGGCC
GGAGGGCAGA TCACCGTCGG TATCCTGACG GCCTTCATCG CCTACATCGG CCGCTTCTAC
AGCCGGCTCG ACTCGATGAG CCGCATCGTG TCGGTCACGC AGAAGGCGGC CGCGGGCGCC
AAGCGCATCT TCGACATCCT GGACCACGTC AGCAGCGTGC CCGATCCGGT CCAGCCCGTC
GAGCTGCCGC GCGTGGAAGG CCGCCTCACG CTGGCCAACG TCAACTTCCG CTACGGCAGC
CGCTCCGTCA TCCGGAACCT CGATTTGCAG ATACGCCCGG GCGAGATGAT CGGCCTCGTG
GGCCACAGCG GCTCGGGCAA GAGCACGCTG GTGAACCTCA TCAGCCGCTT CTACGACGTC
ACCGAAGGCT CCATCCAGGT GGACGGGGTG GACGTGCGCC GCCTGCGCGT GGCCGACTAC
CGCCGCCACA TCGGTCTGGT GCTGCAGGAG CCGTTCCTGT TCTTCGGCAC CATCGCCGAG
AATATCGCCT ACGGCAAGCC TCATGCTTCG CGCGAAGAGA TCGTCGCGGC GGCCCGTGCG
GCCCATGCCC ACGAATTCAT CCTGCGCCTG CCCCATGGCT ACGACTCGCT GGTGGGCGAG
CGCGGCCAGG GCCTGTCGGG CGGCGAGCGC CAGCGCATCA GCATCGCGCG CGCCCTGCTC
ATCGATCCGC GCATCCTCAT CCTCGACGAG GCCACCTCGG CCGTCGATAC CGAAACCGAG
AAGGAAATCC AGAAGGCGCT GGACAATCTC GTGCAGGGGC GCACCACCAT CGCCATCGCC
CACCGGCTCT CCACGCTGCG CAAGGCCGAC CGCCTCGTGG TGATGGACCG CGGCGAGATC
GTCGAGGTCG GTCCGCACGA CGAACTCATG GAGAAGCAGG GCGCTTACTG GCGCCTCTAC
GAAGCCCAGG CGCGCCGCGC CGAGGAAGAC GCCCAGGCGT CGGGCCTCGT GGTGGTGGAC
AGCGCGCTGC TCCATTCCTC CCATCCCGCG GGCACGGTCT GA
 
Protein sequence
MQHHHPADAS GVLTGPIGAE LRARLAPPEN VLAALEVDLS AALRFAPGLL MLTAQRLLAR 
DPEGGVRDWA LSPGLSLRLI EHGGVGTLEL HDATQRLALW RFTLGHHPQA LLLQQKFEQL
VGYLCASGDS PRQAGPDDEA RCEACGAVLP PDADECPACA RQQAPQTSTW VLLRLWRFAH
PYRHQLLLGF LLTLASTGAT LVAPYLTIPI VDRILIPFQN GQRIDAGLVG FYLGALLLSA
LVAWGLGWAR TFVLARVSER IGSDLRTTTY KHLLTLSLDY YGSKRTGDLM ARIGAETDRI
NLFLSLNALD FATDVLMIAM TSVILFSINP WLALVTLVPL PFIAWMIHLV RDRLRTGFEK
IDRVWSEVTN VLADTIPGIR VVKAFAQEKR ESDRFAQANL VNLQANDRVN KTWSLFTPTV
TLLTEVGLLI VWGFGIWLVA GGQITVGILT AFIAYIGRFY SRLDSMSRIV SVTQKAAAGA
KRIFDILDHV SSVPDPVQPV ELPRVEGRLT LANVNFRYGS RSVIRNLDLQ IRPGEMIGLV
GHSGSGKSTL VNLISRFYDV TEGSIQVDGV DVRRLRVADY RRHIGLVLQE PFLFFGTIAE
NIAYGKPHAS REEIVAAARA AHAHEFILRL PHGYDSLVGE RGQGLSGGER QRISIARALL
IDPRILILDE ATSAVDTETE KEIQKALDNL VQGRTTIAIA HRLSTLRKAD RLVVMDRGEI
VEVGPHDELM EKQGAYWRLY EAQARRAEED AQASGLVVVD SALLHSSHPA GTV