| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3915 |
|---|
| Symbol | |
|---|
| ID | 4666074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 4337190 |
|---|
| End bp | 4337828 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639825103 |
|---|
| Product | lysine exporter protein LysE/YggA |
|---|
| Protein accession | YP_972232 |
|---|
| Protein GI | 120612554 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.652927 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTTCC ACACCTGGCT CGCCTTCGCC GCCGCCGCCT GCCTCATCGC CCTCTCGCCC
GGCTCGGGGG CCGTGCTGTC CATGAGCCAC GGGCTGGCCT ACGGCGTGCG CCGCACGGGC
GCGACCATCC TCGGCCTGCA GCTGGGCCTG CTGCTCGTGC TGGTGATCGC CGGTGCCGGC
GTGGGCTCGC TGCTGCTGGC GTCCGAGACC GCGTTCAGCG CGGTGAAGGT GATGGGCGCG
TGCTACCTGA TCTATCTCGG GTTCACCCAG TGGCGCGCGG GCGGCGCCTC GGTGTTCGGC
GACGAAGGGG CCGCCCCCGC CGCCTCCTGG CGCCGCCGCT GCGCCGCCGG CTTCCTCACC
AACGCCACCA ACCCCAAGGG CATCATCTTC ATGGTCGCGG TGCTGCCGCA GTTCCTGACG
GAGTCGCGGC CCCTGTGGAC GCAACTGCTC GCGCTGGGCG CCACCATGGT CGTGGTGGAC
CTCACCGTCA TGCACGGCTA TGCCGCCAGC GCCAGCGCGC TGCGGCGGCT GCTGCGCAGC
CCCCGGGCGG TACGCAACCA GAACCGCGTC TTCGGCGGCC TGCTCATGGC CGTGGGCGCC
GGGCTGTTCT TCGTGCGACG CGGCGGGCAG CACGCCTGA
|
|---|
| Protein sequence | MDFHTWLAFA AAACLIALSP GSGAVLSMSH GLAYGVRRTG ATILGLQLGL LLVLVIAGAG
VGSLLLASET AFSAVKVMGA CYLIYLGFTQ WRAGGASVFG DEGAAPAASW RRRCAAGFLT
NATNPKGIIF MVAVLPQFLT ESRPLWTQLL ALGATMVVVD LTVMHGYAAS ASALRRLLRS
PRAVRNQNRV FGGLLMAVGA GLFFVRRGGQ HA
|
|---|
| |