Gene Aave_3899 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_3899 
Symbol 
ID4665094 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp4322527 
End bp4323435 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content67% 
IMG OID639825087 
Productprotoheme IX farnesyltransferase 
Protein accessionYP_972216 
Protein GI120612538 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) 
TIGRFAM ID[TIGR01473] protoheme IX farnesyltransferase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.295694 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCCG CTTCCGCTTC CACCGCCCCC CAGGCGGTTT CGTCCCGCTT CTCGCAGTTC 
TACGCGCTGA CCAAGCCGCG CGTGGTCCAG CTCATCGTTT TCTGCGCATT CATCGGCATG
GTGCTCGCGG TGCCCGGCCT GCCGAGCGGG GAGCAGTGGC TGCACATGGC CATCGCCTGC
TTCGGGATCT GGCTGGTCGC CGGGGCCGCG GCCGCCTTCA ACTGCCTCGT GGAGCAGCAC
ATCGACGCCA GGATGAACCG CACCGCCTGG CGCCCCACGG CCAAGGGCGA ACTCTCCAAC
GCCCAGACGC TCGCTTTCTC GGCCCTGCTG TGCCTGGCCG GCTCGCTCGT GCTCTTCGTC
TGGGTCAATG CGCTCACCAT GTGGCTCACC TTCGCCACCT TCGTGGGCTA CGCGGTCATC
TACACCGTCG TGCTCAAGCC GCGCACGCCG CAGAACATCG TCATCGGCGG AGCCTCCGGC
GCCATGCCGC CGGTGCTGGG CTGGGCGTCC ATGACGGGCG ACGTGGGGCC GGAGCCGCTG
ATCCTCTTCC TCATCATCTT CCTCTGGACC CCGCCCCATT TCTGGGCGCT CGCCCTCTAC
CGCGTGGAGG ACTACCGCAA GTCCGGCCTG CCCATGCTGC CCGTCACCCA CGGCAACGAG
TTCACCCGCC TGCAGGTGCT GCTCTACACC TTCATCCTGT TCGCCGGCTG CCTGATGCCC
TTCGTGTACG GCATGAGCTC CTGGATCTAC CTGGCCGCGG CGGTGGTGCT CTGCACCGGC
TTCTGCGCTT ATGCCTTCCG CCTCTGGCGC AACTATTCCG ACGCGCTCGC GCGCAAGACC
TTCCGCTTCT CCCTCATCCA CCTGAGCCTG CTTTTCGCGG CGCTGCTGGT GGACCATTAC
GTGCTCTGA
 
Protein sequence
MSAASASTAP QAVSSRFSQF YALTKPRVVQ LIVFCAFIGM VLAVPGLPSG EQWLHMAIAC 
FGIWLVAGAA AAFNCLVEQH IDARMNRTAW RPTAKGELSN AQTLAFSALL CLAGSLVLFV
WVNALTMWLT FATFVGYAVI YTVVLKPRTP QNIVIGGASG AMPPVLGWAS MTGDVGPEPL
ILFLIIFLWT PPHFWALALY RVEDYRKSGL PMLPVTHGNE FTRLQVLLYT FILFAGCLMP
FVYGMSSWIY LAAAVVLCTG FCAYAFRLWR NYSDALARKT FRFSLIHLSL LFAALLVDHY
VL