| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3898 |
|---|
| Symbol | |
|---|
| ID | 4665468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 4321897 |
|---|
| End bp | 4322520 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639825086 |
|---|
| Product | electron transport protein SCO1/SenC |
|---|
| Protein accession | YP_972215 |
|---|
| Protein GI | 120612537 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.88916 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATGC ACAAACGCAC TCTCCTTCGC AGCGCAGCGG CCTGCGCCCT GTTCGCCGGC
GCGGCGGGCC TGCTCGGGGG CTGCTCCCAG GAAAAGGCCC CGTCCTTCCA GGGCGTGGAC
ATCACCGGCG CGGAGTACGC GCGCGACCTG CCGCTGCCCG ACCACAACGG CCAGCCGCGC
CATTTGAAGG ACTTCGCCGG CAAGGTGGTG GTCGTCTTCT TCGGCTATAC CCAGTGCCCG
GACGTCTGCC CGACCTCCAT GGCCGAGCTG GCCGAGGTCA AGCGCTCGCT GGGCGCGGAC
GGCGACCGGC TGCAGGGCCT GTTCGTCACG GTGGACCCGG AGCGCGACAC GCCCGAGGTG
CTCAAGGCCT ACATGACCAA TTTCGATCCG GGCTTCCTCG CGCTGCGCGG CACGCCCGAG
CAGCTCGCGG CCGTCGCCAA GGACTTCAAG ATCTACTACA AGAAGGTGCC CGGAAAGACG
CCGACCAGCT ACACCATGGA CCACTCTGCA GGCAGCTACA TCTACGATCC GGCCGGCCGG
CTGCGCGTCT ATCACCGCTA CGGCAGCGGT GCTCAGGCCC TGGCGTCCGA CGTCAAGGCC
TTGCTGCAGG CGCCTGGCGC CTGA
|
|---|
| Protein sequence | MPMHKRTLLR SAAACALFAG AAGLLGGCSQ EKAPSFQGVD ITGAEYARDL PLPDHNGQPR
HLKDFAGKVV VVFFGYTQCP DVCPTSMAEL AEVKRSLGAD GDRLQGLFVT VDPERDTPEV
LKAYMTNFDP GFLALRGTPE QLAAVAKDFK IYYKKVPGKT PTSYTMDHSA GSYIYDPAGR
LRVYHRYGSG AQALASDVKA LLQAPGA
|
|---|
| |