| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3833 |
|---|
| Symbol | |
|---|
| ID | 4668050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 4260337 |
|---|
| End bp | 4262088 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639825023 |
|---|
| Product | pyruvate dehydrogenase |
|---|
| Protein accession | YP_972152 |
|---|
| Protein GI | 120612474 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCATTT TTGGTTCCTC CAAGGCGAAA TCGGTGGCCG ACCTGCTGGT CGAGACGCTG
GCGCATGCCG GCGTGCAACG CATCTGGGGC GTCACCGGCG ACAGCCTGAA CGCCATCAAC
GACAGCCTGC GCCGGCACGG CGGCATCGAA TGGATGCACG TGCGCCACGA AGAGGCCGGC
GCCTTCGCCG CGGGCGCCGA GGCCCAGGTC ACGGGGCGGC TCGCCGTGTG CGCGGGCAGC
TGCGGTCCGG GCAACCTCCA CCTCATCAAC GGGCTCTACG ACTGCCAGCG CAACCACCAG
CCCGTGCTGG CCATCGCCAG CCACATCCCC TCCAGCGAGA TCGGCCTGGG CTACTTCCAG
GAAACCCACC CGACCGAGCT GTTCCGCGAA TGCAGCCATT TCTGCGAGAT GGTGCAGGAT
CCGAAGCAGT TGCCCGAGGT GCTGCACCGC GCGATGCGCA CCGCCATAGG CCGCCACGGC
GTGGCCGTGA TCGTGCTGCC GGGCGACGTG TCCACCCTCG AAGCGCCGGA GGGCGCGCGG
CCCGATTTCG CACCGCCGGC CCTGCCGCGC CTGCTGCCCG ACGCGGCCGC GCTCGCGGAC
CTCGCCACCC TGCTGAACGG CTCGGAGGCC GTGACCATCC TGGCCGGCGC CGGCACGGCC
GGTGCGCACG ACGAGGTGGT GGCCCTGGCG AAGGCACTGG CCGCGCCCAT CGTGCACGCC
TTCCGCGGCA AGGAGCACAT GGAGTGGGAC AACCCGTTCG ACGTCGGCAT GACCGGCCTG
ATCGGCTTCT CGTCCGGCTA CCACGCGATG CGCGAGTGCG ACACGCTGCT CATGCTGGGC
ACGGACTTTC CGTACCGCGA CTTCTATCCG GAAGATGCGA CCATCGTGCA GATCGACCGC
GACCCCGGCG CGCTGGGCCG GCGCGCGCAA TTGCGCATGG GTCTGGTCGC CGACGTGCGC
GAAGCCGCCG CCATGCTGGC TCCGCTCATC CAGCCGGGCC GCGACACCGG CTTTCTCGAC
AAGGCGCGCG AGCACTACCA GGCGGCGCGC AGGGACCTGG ACGGACTCGC GTCGCCGCGC
GCCGGCGACG AGCCGCTGCA CCCGCAGTTC GTGGCGGCCA CGCTCGACCG GCTGGCTGCC
GACGATGCGG TCTTCACGTT CGACGTGGGC ACGCCGGCCA TCTGGGCCGC GCGCTACCTG
CGCATGAACG GCCGGCGGCG GCTGCTCGGC TCCTTCAACC ACGGCTCGAT GGCCAACGCG
ATGCCGCAGG CGCTGGGCGC GCAGGCGGTG CGGCCCGACC GCCAGGTGGT GTCGATCTCC
GGCGACGGCG GCCTCGCGAT GCTGATGGGC GACATGCTGA CCGCCGTGCA GATGAAGCTG
CCGATCAAGA TCGTGCTCAT CAACAACGGC GTGCTCGGCT TCGTGCAGAT GGAGCAGAAA
GCCGCAGGCT ACCTGGACAC CAACGTCGCG CTGCAGAACC CGGATTTCAG CGCCATCGCG
AACGGCATGG GCTTCCTGGG CCTGCGCGTC GCCCGCTCGG ACGAACTCGA GCCCGCCCTG
GTGCGGGCGC TGGCCCACGA CGGCCCCGCC CTGGTGGACG TGCGGGTGGA TCCGATGGAG
CTGTCGATGC CGCCGAAGGT CAAGGCCGCG CAGGTGAAGG GCTTCAGCCT GTATGCCGCG
CGCGCGGTGA TGAACGGCCG GGGCGACGAG ATCGTCGAGC TGGCGAAAAC CAACCTGCTG
CGCCGGAGGT GA
|
|---|
| Protein sequence | MGIFGSSKAK SVADLLVETL AHAGVQRIWG VTGDSLNAIN DSLRRHGGIE WMHVRHEEAG
AFAAGAEAQV TGRLAVCAGS CGPGNLHLIN GLYDCQRNHQ PVLAIASHIP SSEIGLGYFQ
ETHPTELFRE CSHFCEMVQD PKQLPEVLHR AMRTAIGRHG VAVIVLPGDV STLEAPEGAR
PDFAPPALPR LLPDAAALAD LATLLNGSEA VTILAGAGTA GAHDEVVALA KALAAPIVHA
FRGKEHMEWD NPFDVGMTGL IGFSSGYHAM RECDTLLMLG TDFPYRDFYP EDATIVQIDR
DPGALGRRAQ LRMGLVADVR EAAAMLAPLI QPGRDTGFLD KAREHYQAAR RDLDGLASPR
AGDEPLHPQF VAATLDRLAA DDAVFTFDVG TPAIWAARYL RMNGRRRLLG SFNHGSMANA
MPQALGAQAV RPDRQVVSIS GDGGLAMLMG DMLTAVQMKL PIKIVLINNG VLGFVQMEQK
AAGYLDTNVA LQNPDFSAIA NGMGFLGLRV ARSDELEPAL VRALAHDGPA LVDVRVDPME
LSMPPKVKAA QVKGFSLYAA RAVMNGRGDE IVELAKTNLL RRR
|
|---|
| |