| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3712 |
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| Symbol | |
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| ID | 4666843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | + |
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| Start bp | 4089945 |
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| End bp | 4094417 |
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| Gene Length | 4473 bp |
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| Protein Length | 1490 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639824903 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_972033 |
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| Protein GI | 120612355 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.913964 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAGG GGAAGCCAGC CGCACGCCAG ACAGACTTGA CCAAGAAAGG CGGGCCCATC
GTGCAGGGCT CGCACACGGT GCTGATCGGC TCGGCCGGCG GCATCGCCTG CTCGGTGTGC
CCGGGCGGCG TCACCGAAGG CCATCCGGTG AACCCGCTGC TGGGCGCCAA GGTGCTGCCC
GGCGAGGAAG ACTTCGGCCT GCCCGGCCCG CTGCCGTTCG CGCTGGTGCG CTCGTACTCC
AGCTACCAGA GCCCCGACCC CGCCCCCGTG GGGCTGCTGG GGCCGGGCTG GTGGATGCCC
GGAGAAGCCC GCATCGCGCA TCGGCCCGCA GGCGACGGCG CGCCCGCAGC CCTGCACCTG
CACGACGGCC GGGGCCGCCG CATCGCCTTC GAGGCCCTGG CGCCGGGCGA GATCGCCCAC
AGCCCGAGCG AAGGCCTCTG GCTCGTGCGC TGCGGCACGG AGCACCTGCC CGGCGCGCAC
CAGGGCGGCC ATGCCGGGCG CCTCGCCCGC CTGTGGAATG CCCTGCCGGC GCCAGTGCGC
ACCGATGCGC GCATCACCGT GGCCACCGCA TCGCCGCTGG GCCCCTGGTG GGTCTTCGCG
CCGGGGCCGG TGCCTGCCGC GCCGGACGGC CAGGCAGCCG GCACGGACGA CACGCGCAAC
ACGGGTGACA CGAACGACCA CGCGGCCCCG CACGGCGTGC TGCACGGCAT CTGCGACCGC
TTCGGCCGCG TGCAGCGCCA CGAGCGCCAT GCGGACGGGC CTTTCGCGGG CCACCTGCGC
AGCGTCACCG ACGGCGCCGG CCGCCGCTAC GGCTTCGAGC TGGAACGCGT GGCCCCGGCC
TCGCCGGCGG CGCATGGCTG GGGCGCGGAC AGTGGCGTGC GCCTCGTGGC CGTGTGGCTG
CAGGCCGATC CGCACCAGGG CCAGGAATCG CTGCCCGCGC CGCTCGCACT GGTGCGCTAC
GCCTATACCG GCCGCGGAGA GCTCGCCCAG GTGACCGACC GCACGGGCCG CACCGTGCGC
CGCTTCGAGT ACGGCGACGC GGCCCACCCG GGCCGCATGA CGGGCCATGC CCGCGCCGGC
CGCCCGATGA CGCGCTATGC CTACGACGCA GAGGGCCGCG TGGCCGCGCA GACCACGCCG
CACGGGCTGG ACCTGCGCTT CGACTACACC CCGCTCCCGG CGGACCCGAC GGCCTCGCCG
CCGCAGCCGG CGCGCGCCAG CACGCTGGTG ACCGACGGCC TGGGCCGCCA GCGCCGCTAC
GTGTTCGAGG GCGCCGGGGG CCTGGCCCGC GTGGCCGAGC GCATCGAGGC GGACGGCGCC
CGCTCCACCT GGAAGCACGA CACCGCAGGC CGCCTGCTGG AACACACGGA TGCGCTGGGC
CGCCGCGTGC AGCACACCAT CGATGCGGCC ACGGGCCTGG CCATCGGCAT CACCGATGCA
GCCGGCCGCA GCCACCGCAT CGCGCACGAC GCGCTGGGCC TGCCCCTGCG CCACCAGGCC
CCGGCACCGG AAGGCCCGAT GGGCGATCCG CTCGTCACCA CCTGGGAGCA CGACGCCTGG
GGCCGCCTCG TGCGCCATAC CGATCCGCTC GGCCACACCA CGCACTACCG CTACCCCGAG
ACCACGGCAG CGCACCCCGA CCTGCCCATC GCCATCACGG ACGCCCGGGG CGGTACCAGC
ACGCTGCAGT GGAACGCGCT GGGCCTGCTG GCCTGTCGCA CCGACTGCAG CGGGCGTGCC
ACGCGCTTCC ACTACGACGC CTGGGGCCGC ATGGTGCGCG TGCAGGGCGA GGAAGGGCTG
GAGCTGCGCA CGGCCTACGA CGCCCTGGGC CGGCAGGCCG AGTCCATCGA CGCCCTGGGC
CGCACCACCC GCTGGCGCTA CGCCCCGGAA GGCGATGACC TCATCGCCAT CGACCACCCC
GGCGGCCTGT GCGAACGCTT CGCGCACGAT GCCTGGGGCC GCGTGGTCCG CTACGAATAC
GGCAGTGCTC CCACCCGCGA ACCGCAGGAC GGCAACCCGG GCACGCCGGC ACCGCCGCAC
TGGCTCGCCC AGCACTACCG CTACGACCTC GCCGGCCGCC TCGTGGAACT GCACAACGAG
AATGCCCGGG CCCACTGCTT CGCCTACGAC GTGCGCGACC GGCTCGTCGC GGAAACCGGC
TTCGATGGCC TCGTGACCCG CCATGCCTAC GACCGGGGCG GCCAGCGCAT CCGCACCGAG
GACGCTCGCC ACGCCATCGA CTACGAGTGG AGCAGCACCG GGCAACTGCT GGCCCGCACC
ATCACGCCCC TGCCGGGCAC CACTCAGGAA GCCCCCATCA CCGAACGCTT CGAGCACGAC
GGCGCGGGAC AGCTGGTGGC CGCCCACCAC CACACCGCGC TGCACCGCCA CCAGGTGAGC
GTGCACCTGC GGCGCGACCG CCTGGGCCGC ATCCTGGGCG AGCGCCAGGA GATGCGCTCC
GCCGAGGGCG CCCTGCTCTG GAGCCACGAA AGCACGCACG CCCTGGACGC GGGGGGAGCG
CCCACCGGGG CCGACCTGCC CGGCCTGCCG CCGCTGCAAT GGCTGACCTA CGGCCCGGGC
CACGTGCACG GCCTGCTGCT GGACGGCGAG CCCCTGCTGC ACATCGAGCG CGACGGCCTG
CACCGGCCCG TGGCGCTGGA TTTCGGGGCC AGCCAGACCC GCTGGCGCCG CGATGCGCTC
TCGCGGCTGC AGGCGCTCTC CGTGCATGGC ACGGCCGATG CGGGCCTGCC CCGGCCGTCC
GGCGGCCTGC CCGGGCTGCC AGCCCTGGCG CGCCAGCACC ACTACGACGC TGCCGGCCGG
CTCGCGCGCA TCGACACACC GCAGGGCACG ATCCACCATG CCTACGACAC CGCCGGCCGC
CTGGCCGCGG CCCACCTGCC CGGGCGCGAG CCGCTGCACT ACCGCTACGA CCCGGCAGGC
AACCCCTGGC AGCCCGCCGC CGACGCCATG GGCGGCCCGC AGGGTGACTG GGCCGGCGAG
GTACGCCGCC ACCTGCACGA CCCGGCCTTC GACCTGCTGC GCCAGGACGG CGCGGCCCCG
CCCGGCCACG CCCGCGACCG CTGGCCCGAC AACCGCGTGC GGGCCCACGG CCCCTGGCGC
TACCGCTGGG ACGCCTGCGG CAACCTCGTG GAAAAAACGC ATGCCGACGG CCGGCAGACC
CACCGCCTGC ACTGGGACCA CGCCCAGCGC CTCGTCGCCC ACGAGCAGAT CGACCACGCC
ACGGGCGAGC GGATCCGGCG CATCCACCAC TACGACGTTT TCAGCCGGCG CATCGCCAGC
CGCATCGAGC GCTCGCAGGG CAGCGGCCCG CAACAACAGC CGACCGCCAC CGTCACCGAG
CGCTGCCACG GCTGGCAGGG CGATGCCCTC ACCCTCACCG AACTGCGCGA CCCGCTGCGC
CCGCAGGACG CGCAGCGCAT CCACACGCTC TACCACCCGG GCACCTTCGT GCCCCTGCTG
CGCATCCAGA CCGGCGCCTG CGCCGAACCG CCCACCCTGG CGCAGCTGCT GGGCGCCGCC
GAACCCGGCG ACCGCGAGCA GCCCGCGCCC ATGCAGGCGC TGCAGGAAGA ACTGCTCCAC
GGCGCCAGCG ACCACACGCG CCGCCACCTG CACAGCATGG GCTGGGACGC CGAGCGCCTG
CAGCGGCAAC TGCGCGGAGA AGGCGCCGCC ATCACGCACC TGCACCTCTA CCACTGCGAC
CACCTGGGCA CGCCCCTGGC GCTCATCGAC GCCCAGGGCC GCATAGACTG GCAGATCGAG
CTGGACCCGT GGGGGAACAC AGTGAATGAG CACAACCCGC TGGGGCTGCA CCAGCCGATC
CGCATGCAGG GGCAGCACGA CGAAGGGGAC GGGGCGGGGT TGTTCTACAA CCGGCACCGG
TACTATGACC CGGGGATGGG GAGGTATGTA TCTCAGGATC TGATCGGGTT GGCGGGTGGG
GTGAATACCT ACCAATATGG AGAAAATAAT CCATTAGTTT TTACCGACCC GGAAGGCTTG
CAAACCAACA GACCGAATCG CCCAAGTTGG TGGAACGAAG GGTGGTCCCC CAAAACACCT
CCGGGCAACT GTGCTACGGC AGAGTGCGCA GCAGGAATTG GAGATACGAA ACCCAAGGGC
AGCACCAAAC CCACCGAGGG TTTAACCTGC ACAGTCCGAG TGGGTCTAGG CGTTGGAATA
ACGGCCTCCT ACAACACAGA AAAAGGCCTT ACATATTTAG GTGTCGGCCC GCAAGCAGGA
CTGAGCGCAT CCATCACTGG TGCGGGTGAA ACACTGATCA CCGGCGAGGG AGCAAAAGGT
CTTGTGGTAC AAGCCTCGGG GGCTTTTGGG AATGGAGTAG TGGGCATCAG CGGGAACAGT
GCCATGGGAG TAGGAGGCAC AACAACCACA GTTTCCCCTG GCGTCGGCAC TATAGGAGTT
TCTGTCGGAG CAACCGTAGG CTATCGAAAA TGA
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| Protein sequence | MTQGKPAARQ TDLTKKGGPI VQGSHTVLIG SAGGIACSVC PGGVTEGHPV NPLLGAKVLP
GEEDFGLPGP LPFALVRSYS SYQSPDPAPV GLLGPGWWMP GEARIAHRPA GDGAPAALHL
HDGRGRRIAF EALAPGEIAH SPSEGLWLVR CGTEHLPGAH QGGHAGRLAR LWNALPAPVR
TDARITVATA SPLGPWWVFA PGPVPAAPDG QAAGTDDTRN TGDTNDHAAP HGVLHGICDR
FGRVQRHERH ADGPFAGHLR SVTDGAGRRY GFELERVAPA SPAAHGWGAD SGVRLVAVWL
QADPHQGQES LPAPLALVRY AYTGRGELAQ VTDRTGRTVR RFEYGDAAHP GRMTGHARAG
RPMTRYAYDA EGRVAAQTTP HGLDLRFDYT PLPADPTASP PQPARASTLV TDGLGRQRRY
VFEGAGGLAR VAERIEADGA RSTWKHDTAG RLLEHTDALG RRVQHTIDAA TGLAIGITDA
AGRSHRIAHD ALGLPLRHQA PAPEGPMGDP LVTTWEHDAW GRLVRHTDPL GHTTHYRYPE
TTAAHPDLPI AITDARGGTS TLQWNALGLL ACRTDCSGRA TRFHYDAWGR MVRVQGEEGL
ELRTAYDALG RQAESIDALG RTTRWRYAPE GDDLIAIDHP GGLCERFAHD AWGRVVRYEY
GSAPTREPQD GNPGTPAPPH WLAQHYRYDL AGRLVELHNE NARAHCFAYD VRDRLVAETG
FDGLVTRHAY DRGGQRIRTE DARHAIDYEW SSTGQLLART ITPLPGTTQE APITERFEHD
GAGQLVAAHH HTALHRHQVS VHLRRDRLGR ILGERQEMRS AEGALLWSHE STHALDAGGA
PTGADLPGLP PLQWLTYGPG HVHGLLLDGE PLLHIERDGL HRPVALDFGA SQTRWRRDAL
SRLQALSVHG TADAGLPRPS GGLPGLPALA RQHHYDAAGR LARIDTPQGT IHHAYDTAGR
LAAAHLPGRE PLHYRYDPAG NPWQPAADAM GGPQGDWAGE VRRHLHDPAF DLLRQDGAAP
PGHARDRWPD NRVRAHGPWR YRWDACGNLV EKTHADGRQT HRLHWDHAQR LVAHEQIDHA
TGERIRRIHH YDVFSRRIAS RIERSQGSGP QQQPTATVTE RCHGWQGDAL TLTELRDPLR
PQDAQRIHTL YHPGTFVPLL RIQTGACAEP PTLAQLLGAA EPGDREQPAP MQALQEELLH
GASDHTRRHL HSMGWDAERL QRQLRGEGAA ITHLHLYHCD HLGTPLALID AQGRIDWQIE
LDPWGNTVNE HNPLGLHQPI RMQGQHDEGD GAGLFYNRHR YYDPGMGRYV SQDLIGLAGG
VNTYQYGENN PLVFTDPEGL QTNRPNRPSW WNEGWSPKTP PGNCATAECA AGIGDTKPKG
STKPTEGLTC TVRVGLGVGI TASYNTEKGL TYLGVGPQAG LSASITGAGE TLITGEGAKG
LVVQASGAFG NGVVGISGNS AMGVGGTTTT VSPGVGTIGV SVGATVGYRK
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