Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_3486 |
Symbol | |
ID | 4669881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 3850004 |
End bp | 3852328 |
Gene Length | 2325 bp |
Protein Length | 774 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639824680 |
Product | Rhs element Vgr protein |
Protein accession | YP_971815 |
Protein GI | 120612137 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.740933 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.610265 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACACGCC GCGTCACCAT CCGGACGCCC CTGGGAGAGC AGCTGCAATT CAGGCAGCTG CGGGGTAGCG AGGAGCTGAG CCAGCTTTTC TCCTTCGACA TCGACCTGCT CTCGGAAGGC CGCGACATCG ATCCCAAGGC CTTGCTCGGC AAGACAGCGA CGGTGGAGAT CGAGACCGAA GGCGGCGGCA AGCGGTACCT GGACGGCCTG GTCACGCGCT TCGGCATGCA GGGGCAGGAC CATCGGCTGT ACTCCTACCA CCTGCGCCTG CAGCCCTGGC TCTGGGTGGC CACGCGGCGG CAGGACTTCC GCATCTTCCA GTTCAAGACC GTCCCGCAGA TCGTGCAGGA GGTGCTGGGC CGCTACGGTT ATCCGCTGCA GTTGAAGCTC ACGCGCGCGT ACCGCGCCTG GGACTACTGC GTGCAGTACG GCGAGAGCGA CTTCGACTTC GTCTCCCGCC TCTTGGAGCA TGAGGGCGCG TACTACTACT TCCAGCACGC GAGCGGCCAG CACACCCTGG TGATCGCCGA TGACATCGTG GCCGGGCACG AACCGCTGCC GGGCGCGGCG GTGATCCCGT TCTACCCGCC TGAGAAGTCG GCCGTGGCCG ACCGCGAGAA CATCCATGCC TGGACGCTGG GCGAGGAGAT CAAGCCGGGC CGGTACTACA ACGACGACTA CGACTTCAAG AAGCCGAGGT CGGACCTGTC CAACATGCGC CAGCAGCCTC CGGGCCATGC GCACGATGCC TACGAGATCT ACGAATGGCC GGGCGGCTAC GTGCAGCACG GCGACGGCGA GCAGTACGCC CGCGTGCGGC TGCAGGAAGG CCTGACCGGG CACAGCACCG TCAGGGGCGA ATCGCGCCAC AGGAGCCTGG CGCCGGGCTA CACCTTCACG CTGGAGAACT ACCCGCGCGG CGACCAGAAC CGGCAGTACC TCATCACCGG CGTCACCTAC CACCTGCACG AGAACCCGCG GACATCTTCA GCCAACAGCG CCAGGCCCGG CGAGACGCTC AAGCACAACG AAGAGCACGG CTCCTTCCAG AAGTTCAGCC TCACGGCCCA GCCCACGAGC CTGCCCTATA CCCCCGCCAG AAAGACCCCG AAGCCGCGCA CCACCGGCCC GCAGACCGCC GTCGTGGTCG GCCCGGCCGG GGAAGAAATC TGGACCGACG AATACGGCCG CATCAAGGTG CAGTTCCACT GGGACCGGCT GGGGGCGATG GACGAGAACT CCAGTTGCTG GATGCGGGTG GCCACGAGCT GGGCGGGCTC GGGCTTCGGT GCGATCTCGA TCCCACGCAT TGGCCAAGAA GTCATAGTGG ACTTCCTGAA CGGCGACCCC GACTATCCCA TCGTCACCGG CAGCGTCTAT AACGCCGCGA ACATGCCGCC CTGGGCCTTG CCGGGCAACG CCACGCAGTC GGGCATCAAG ACGAAGTCCA GCAAGGGCGG GGCGTTCGGC GACGGGATGA AGAACGGCGC GGGCGATGCC AACGCGATCT GCTTCGAGGA CAAGAAGGGC GCGGAGCAGG TGTGGCTGCA TGCGCAGAAG GACCAGCTCA CCGAAGTCGA GAACGATGAG GATAAGTGGG TGGGAAATGA CCGGCGAAAA ACGATCGACC GGGACGAGAC CACCATCGTG CATCGCGACC GGACAGAAAC TGTGGACCGC GACGAGAAGA TCACGGTGCA CAACAACCGC ACGGAGCGGG TGGACCATGA CGAGACGATC TCGATCGGCG ACAACCGGAA CGAAGATGTC GGCATCGACG AGACGGTTTC CATCGGCAAG AACCGCACGA AGACCATCGG CCGCAACGAG AAGGACAGGA TCGGCAACAA CTGGTCGATC AAGGTCGGCA GCTTCAAGAC CGAAACCATC GGCCTGGCCT ACATGCAGAA CGTGGGCCTG GCCAAGATGG TGAACATCGG CGCGGCCTAC AACGTGAACG TGGGCGCGGC GATGGTGGTG AACGTGGGGC TCAACCAGTC CACCAACGTG CTCATGAACC GGTCCGTCAC CGTGGGACAG AGCCAGACCA CGAAGGTCGG CGCGGATCGC ACGGACGAGA CGTCCGACAA CTACACGGAG AACGTGGGCA AGAACTCGGC CACCACCGTG GGCGAAGTGC GCACCCTGAG CGTGGGCAAG GAAATGTCCG TCAAGGTCGG CGACGCGATC GAGATCCAGT GCGGCAAGGC CGTGCTGCGC ATGACCAGCG ACGGCACGGT GCAGATCAAC GGGCAGACGA TTTCCATCGC GGGCAGCTCC AAGGTGACGG TCTCGTCGCC GGACAGCCAC GTCAATCCTG CGTGA
|
Protein sequence | MTRRVTIRTP LGEQLQFRQL RGSEELSQLF SFDIDLLSEG RDIDPKALLG KTATVEIETE GGGKRYLDGL VTRFGMQGQD HRLYSYHLRL QPWLWVATRR QDFRIFQFKT VPQIVQEVLG RYGYPLQLKL TRAYRAWDYC VQYGESDFDF VSRLLEHEGA YYYFQHASGQ HTLVIADDIV AGHEPLPGAA VIPFYPPEKS AVADRENIHA WTLGEEIKPG RYYNDDYDFK KPRSDLSNMR QQPPGHAHDA YEIYEWPGGY VQHGDGEQYA RVRLQEGLTG HSTVRGESRH RSLAPGYTFT LENYPRGDQN RQYLITGVTY HLHENPRTSS ANSARPGETL KHNEEHGSFQ KFSLTAQPTS LPYTPARKTP KPRTTGPQTA VVVGPAGEEI WTDEYGRIKV QFHWDRLGAM DENSSCWMRV ATSWAGSGFG AISIPRIGQE VIVDFLNGDP DYPIVTGSVY NAANMPPWAL PGNATQSGIK TKSSKGGAFG DGMKNGAGDA NAICFEDKKG AEQVWLHAQK DQLTEVENDE DKWVGNDRRK TIDRDETTIV HRDRTETVDR DEKITVHNNR TERVDHDETI SIGDNRNEDV GIDETVSIGK NRTKTIGRNE KDRIGNNWSI KVGSFKTETI GLAYMQNVGL AKMVNIGAAY NVNVGAAMVV NVGLNQSTNV LMNRSVTVGQ SQTTKVGADR TDETSDNYTE NVGKNSATTV GEVRTLSVGK EMSVKVGDAI EIQCGKAVLR MTSDGTVQIN GQTISIAGSS KVTVSSPDSH VNPA
|
| |