| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3478 |
|---|
| Symbol | |
|---|
| ID | 4665504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 3838572 |
|---|
| End bp | 3840233 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639824673 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_971808 |
|---|
| Protein GI | 120612130 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.982216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCGCA TGCTGCAGGC CGGCAATGGC GATGCCCGCG TACACTTCAC CTACGACCCG
CTCTCGCGCC TGACCGAAGA GGTGCAGGAG CATCTGGCGC CGGAAGGGGC GGGCACCCTG
GGCCGCTATG CCTGGCGCCA TGCCTACGAC GCGCTGGGCA ACCGCACGGA CAGCCGCATG
CCCGGCGGCC GGCACGTGCA ATGGCTCTAC TACGGCTCGG GCCACCTGCA CCAGATCCGG
GTGGACGGGC ACGTGCTCTC GGACATCGAG CGCGACGCGC TGCACCAGGA GATCGAGCGC
ACGCAGGGTG CGCTGGAGAG CCGCTACGGC TGGGATCCGA TGGGCCGGCT GGTGGCGCAC
AAGGTGGGCC GGCGGCAGGC GCTGCAGGGC CAGCCGGGCA TGCCGTCGCC ACAGGCCCTG
CGGGACCGGG ACCAGGGCCT GCCCGCATTG CCGCAGCTTC CTTCGGGCGA CCGCATCGCG
CGGCAGTACC GCTACGACCC GACGGGCCAC CTGATCGCCA CGCGCGACGG CCTGCGGGGC
GAGAGCCACT ACCGCTACGA CCCGCTGGGC CGCATCCTGG CGGCGCAGCG CGGGGAAGGC
AAACAACAGC CCACCGAGCG CGAGACCTTC GCCTTCGACC CGGCCGGCAA CCTGCTGAAC
CCGAACCGGG GCGGCGCGCA ATCCAGCGGC GGCGTGGGCC AGCGGGACGT GGTGCCATAC
AACCGGCTGG CGGTGTACCA GGACCTGCGC TTCACCTACG ACCTGCACGG CAACACCATC
GAGCGCCGCA TCGGCTGGCA CACGGTGCAG CACTACCGCT ACAGCCCGGA GCACCAGATC
GTGGAGGCGC GCGTGGTGCG GTATCGCGAA CGGCCCGCCG AAGGGCAAGC GGAGCCTGCG
GCCACGGAGC AGGTCACCCA CTACCGCTAC GACGCCCTGG GCCGGCGCAT CGACAAGCGG
GACGCGTTCG GGCGCACGGT GTTTCTCTAC GACGGGGACC TGCTGGCGGG CGAACTGCGC
GGCAGCAGGC TGTCGGAATA CCTCTACGAG CCGGACAGCT TCGTGCCGCT GGCGAAGCTG
GAATCGGAGT GGAAGGGTGA GGCCGCAGAC AAAGAAAGGG ATGAGGACAA GGAGTCGGCA
CGACCCAAGG ACTTCGCTGC CTACTACTAC CAATGCGACC AGATCGGCGC GCCGCAGGAG
CTGACGGACG AGCAGGGCCG CATCGTGTGG GCGGCGAGCT ACCAGGTGTG GGGTCAGACG
CGGGCGCTGC AAGTCATGCG CACGGGCACG GACGACGCGG CGGTGTTCAC CCAGGCGGAG
CGGCCTTTGG CGCTGGCGGC GAAGGGGGAT GTGCAGGCGC TGAGCTTCGT GGAGCAACCG
CTGCGGTTCC AGGGGCAGTA CTTCGATGGC GAGACGGGAC TGCACTACAA CCGGTTTCGG
TACTACGATC CGGTGACGGG GCGGTTCGTG CATCAGGATC CGATTGGGTT GTTGGGTGGT
ACCAATCTTT TTACCTATGC TCCAAATGCA TTTAATTGGG TGGATGAGTA TGGATTGCAA
AGAAAGAACA AAAGTTGCTC AATTTGTGGT TCGCAAAGAT GTAAGACGCT GGCAGATTGG
CTGAAGGATT ATCCGGAAAT ATTGAAAGAG GCCAGAGAAT AA
|
|---|
| Protein sequence | MGRMLQAGNG DARVHFTYDP LSRLTEEVQE HLAPEGAGTL GRYAWRHAYD ALGNRTDSRM
PGGRHVQWLY YGSGHLHQIR VDGHVLSDIE RDALHQEIER TQGALESRYG WDPMGRLVAH
KVGRRQALQG QPGMPSPQAL RDRDQGLPAL PQLPSGDRIA RQYRYDPTGH LIATRDGLRG
ESHYRYDPLG RILAAQRGEG KQQPTERETF AFDPAGNLLN PNRGGAQSSG GVGQRDVVPY
NRLAVYQDLR FTYDLHGNTI ERRIGWHTVQ HYRYSPEHQI VEARVVRYRE RPAEGQAEPA
ATEQVTHYRY DALGRRIDKR DAFGRTVFLY DGDLLAGELR GSRLSEYLYE PDSFVPLAKL
ESEWKGEAAD KERDEDKESA RPKDFAAYYY QCDQIGAPQE LTDEQGRIVW AASYQVWGQT
RALQVMRTGT DDAAVFTQAE RPLALAAKGD VQALSFVEQP LRFQGQYFDG ETGLHYNRFR
YYDPVTGRFV HQDPIGLLGG TNLFTYAPNA FNWVDEYGLQ RKNKSCSICG SQRCKTLADW
LKDYPEILKE ARE
|
|---|
| |