| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3407 |
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| Symbol | |
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| ID | 4668240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | + |
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| Start bp | 3763372 |
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| End bp | 3765174 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639824603 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_971738 |
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| Protein GI | 120612060 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.830424 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGCCT CCGCCCCCCA GGGAGCCCCC GCGACGGACA CCGCCGCGGC TCCCGCATCC
GCCCCCCCTT CCCTGTTCGC GCGCCTGCGG CGCATGTCCT CGTACTTCGG GGGGCAGCGC
CTCGCCTGGT CGCTGGCGGT GCTGGCCACC GTGGTGGCCG CGGTGACCGA GCCGCTGATC
CCCGCGCTGC TCAAGCCTTT GCTGGACCAG GGCTTCACGG AAGGCTCGCT CAAGCTCTGG
CTGGTGCCGG TGGCCGTCAT GGGGGTGTTT TTCGTGCGCG GGCTGGCGCA GTTCGGCGGG
CAATACGCCC TGGCCCGCAT CGCCAACGAA GGCATGCTGA AGCTGCGCGA GACACTGTTC
GAGCGCCTGC TGTCGGCGGA GATGGCGCTG TTTTCCCGCC AGTCGGCGAG CACGCTGTCG
AACACGGTGG TGTACGAAGT GCAGAACGGC GCCACGCAGC TGGTGCAGGC GCTGCTGGGC
ATTTCGCGCG ACGGCTTCAC GCTGGTCGCG CTGCTGGTGT ACCTGCTCTA CCTGAACTGG
CAGCTGACGC TCATCGTCGC GTTCCTGGTG CCCGGCGTGG CATGGATCAT GAAGACGCTG
TCGCGCCGCC TCTACCAGAT CACCAAGAGC AGCCAGGAAG CGACGGACCA GCTCGCCTAC
GTGGTGGAGG AAAACGTGCT GGCCCACCGC ATGGTGCGGC TGCACAGCGC GCAGCCCGCG
CAGGCGCGCC GCTTCGGGGT GCTCAGCCAG AGCCTGCGAC GCCTGGCGAT CAAGGCCACG
ATCGCCTCGG CCGCGATGAC CCCGCTGACG CAATTGCTGG CCGCGGCGGC GCTGTCGGCG
GTGATCTGCG TGGCGCTCTG GCAGAGCCAC ATCGGGCAGA CGCGGGAAGT GACCGTGGGC
GGCTTCGCGG CCTTCATGGC GGCGATGCTG ATGCTGATCG CGCCCATCCG CCGGCTGGCG
GACGTGGCCA ACCCGCTGAC GCGCGGCGTC GCCGCGCTGG AGCGCGGCCT GGTGCTGCTG
GAGAGCGCGC CGGCCGAGTC GGGCGGCCGG CACGCGCCGA AGGAGCGTGC GCAGGGCGCG
CTGGAACTCG AGGGCGTGAC GGTGGCCTTC GGGGCCGAGC TGGCGCCCGC GCTGGACCGG
CTGCACCTGT CGGTACGGCC CGGCGAGGTC GTCGCGCTGG TGGGCCCCTC GGGTGCCGGC
AAGACCACGC TGGTCAACCT GCTGCCGCGC TTCCTGCAGC CCACCGAGGG CCGCGTGCTG
CTCGACGGCC GGCCTCTGGA GGAATGGAAC CTGTCCGCGC TGCGCTCGCA GTTCGCCATG
GTGAGCCAGG ACGTGGTGAT GTTCAACGAC ACCGTGGCGG CCAACGTGGC GCTGGGCGCG
GACGTGGACG AGGCGCGCGT GCAGGCCTGC CTGGAAGCAG CCAACCTGTC GGCGCACGTG
GCGTCGATGC CACAGGGCAT GCACACGCTG GTGGGCCACA ACGCCGTACA GCTCTCCGGT
GGCCAGCGCC AGCGCCTGGC GATCGCGCGG GCGCTCTACA AGGATGCGCC GATCCTGATC
CTGGACGAGG CCACCTCGGC CCTCGACACC GAATCCGAGC GGCTGGTGCA GGACGCCCTG
CAGCGGCTCA TGCGCGGGCG CACCACGCTG GTGATCGCGC ACCGCCTCTC CACCATCGAG
CATGCCGACC GGGTGGTGGT GATGGAGCGC GGCCGCATCG TGGAACAGGG CACGGATGCC
GAACTGCAGG CGCGCGGCGG CCTGTATGCG CGCCTGAAGG GCTCCGCCCT CGCGGGCGGC
TGA
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| Protein sequence | MQASAPQGAP ATDTAAAPAS APPSLFARLR RMSSYFGGQR LAWSLAVLAT VVAAVTEPLI
PALLKPLLDQ GFTEGSLKLW LVPVAVMGVF FVRGLAQFGG QYALARIANE GMLKLRETLF
ERLLSAEMAL FSRQSASTLS NTVVYEVQNG ATQLVQALLG ISRDGFTLVA LLVYLLYLNW
QLTLIVAFLV PGVAWIMKTL SRRLYQITKS SQEATDQLAY VVEENVLAHR MVRLHSAQPA
QARRFGVLSQ SLRRLAIKAT IASAAMTPLT QLLAAAALSA VICVALWQSH IGQTREVTVG
GFAAFMAAML MLIAPIRRLA DVANPLTRGV AALERGLVLL ESAPAESGGR HAPKERAQGA
LELEGVTVAF GAELAPALDR LHLSVRPGEV VALVGPSGAG KTTLVNLLPR FLQPTEGRVL
LDGRPLEEWN LSALRSQFAM VSQDVVMFND TVAANVALGA DVDEARVQAC LEAANLSAHV
ASMPQGMHTL VGHNAVQLSG GQRQRLAIAR ALYKDAPILI LDEATSALDT ESERLVQDAL
QRLMRGRTTL VIAHRLSTIE HADRVVVMER GRIVEQGTDA ELQARGGLYA RLKGSALAGG
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