| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3406 |
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| Symbol | tolB |
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| ID | 4667774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 3761920 |
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| End bp | 3763236 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639824602 |
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| Product | translocation protein TolB |
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| Protein accession | YP_971737 |
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| Protein GI | 120612059 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.569267 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCAG ACCGCCCATC CCATCCTCTC GCCGCGGCCC TGCCGCACGC CACGCGCCGC
CACGCCATCG TGGCCCTCGC CTCCGCAGCC TCCTTTCCCG CCTTCGCGCA GTTCCGCGTC
GAGATCACCG GCGTGGGCCT GACCCAGTTG CCGACGGCCA TCGCGCCGTT CCGCGGCGAG
GCGGGTGCAC CGCAGAAGAT CTCCGCCATC GTGCAGGCCG ACCTGGAGCG CAGCGGCCAG
TTCCGTGCCG TGGACGCCTC CGGCCCGCAA CTGGACGAAA ACTCCCGCCC CGACGTGGCC
CTCTGGAAGC AGAAGGGCGC CGATTCGCTC ACCACCGGCA GCATCACGCG CCTGCCGGAC
GGCCGCTACG ACGTGCGCTT CCGCCTCTGG GAGACGGTGC GCGGCGAGGA CAAGGGCGGC
CAGAGCTTCG TGGTCACGCA GGCCGACCTG CGGCTCGTCG CCCACCGCAT CGCCGACTAC
GTGTACGAGA AGCTCACCGG CCAGCGCGGC ATCTTCTCGA CCCGCATCGC CTACGTCACC
AAGGCCGGCA GCCGCTACAG CCTCTGGGTG GCGGACGCCG ACGGCGAGAA CGCCCAGTCG
GCGCTCTCCA GCCCCGAGCC CATCATCTCG CCGGCCTGGT CGCCCTCCGG AACGCAGCTT
GCCTACGTGT CGTTCGAGTC GCGCAAGCCC GTGGTGTACG TGCACGACGT CTCGACCGGC
CGTCGCCGCC TGATCGCCAA CTTCCGCGGC TCCAACAGCG CGCCCGCCTG GTCGCCGGAC
GGCCGCACGC TCGCCGTCAC CCTCAGCCGC GACGGCAGCT CGCAGCTCTA CACGATCGAC
GCCAACGGCG GCGAGCCCCG CCGGCTCATG CAGAGTTCGG GCATCGACAC CGAGCCCACC
TATTCCAGCG ACGGCCGCAG CATCTACTTC GTGAGCGATC GCGGCGGCGC CCCGCAGATC
TACCGCGTGC CCGCCACGGG GGGAAGCGCC GAGCGCGTCA CCTTCACGGG CACCTACAAC
ATTTCTCCGA GCATCAGCCC CGATGGCAAG TGGTTGGCCT ACATCTCCCG TGTGGGAGGG
GCTTTCAAAC TCCACGTCAT GGATCTGACG TCCGGCAGCG TGACCGCCAT CACCGACACC
ACCGCCGATG AGAGCCCGAG CTTCGCGCCC AATGGCAGAC TCATCGTCTA TGCGACCCAG
CAGCAGGGCC GCGAAGCGCT GATGACCACC ACGCTGGACG GCAAGATCAA GGCCCGTCTG
GCGGGGCAGA ATGGCGATAT CCGGGAGCCG GACTGGGGTC CGTTCCAGAA ACAATAA
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| Protein sequence | MTSDRPSHPL AAALPHATRR HAIVALASAA SFPAFAQFRV EITGVGLTQL PTAIAPFRGE
AGAPQKISAI VQADLERSGQ FRAVDASGPQ LDENSRPDVA LWKQKGADSL TTGSITRLPD
GRYDVRFRLW ETVRGEDKGG QSFVVTQADL RLVAHRIADY VYEKLTGQRG IFSTRIAYVT
KAGSRYSLWV ADADGENAQS ALSSPEPIIS PAWSPSGTQL AYVSFESRKP VVYVHDVSTG
RRRLIANFRG SNSAPAWSPD GRTLAVTLSR DGSSQLYTID ANGGEPRRLM QSSGIDTEPT
YSSDGRSIYF VSDRGGAPQI YRVPATGGSA ERVTFTGTYN ISPSISPDGK WLAYISRVGG
AFKLHVMDLT SGSVTAITDT TADESPSFAP NGRLIVYATQ QQGREALMTT TLDGKIKARL
AGQNGDIREP DWGPFQKQ
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