| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3355 |
|---|
| Symbol | |
|---|
| ID | 4665755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 3708505 |
|---|
| End bp | 3711528 |
|---|
| Gene Length | 3024 bp |
|---|
| Protein Length | 1007 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639824551 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_971687 |
|---|
| Protein GI | 120612009 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.18974 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCA CCAGTGAAGT CGCATTCGAA ACCGCCATCG AGGCGGTCTT GCTGAGTGAA
GGATATACGC GGGTCGACGT CAAAGGCTTC GACCGCGAGC GCGCGATTTT CCTCGATGAG
GCACTGGCCT TCATCCGTGC CACCCAGGGC AAGGTGTGGG AGAAGCTAGA AGCCCTGCAC
GGCGAGCAGA CCGGTGCGCG CGTGCTGGAG TCGCTATGCA AGTGGCTGGA TACCCATGGC
GCCCTGGCCA CGCTGCGCCA CGGTTTCAAA TGCTTCGGGC GCACGCTGCG GATAGCCTTC
TTTCGCCCCG CCCACGGCCT GAACCCGGAA CTGGAGGCGC GCTACCAGGC CAACCGGCTG
GGTCTGACCC GCCAATTGCA TTTCAGCCCG AAGTCTGAGA AGTCTCTGGA TGTAGTGTTG
TCGGTCAACG GCATTCCGGT GGTGACGCTG GAACTCAAGA ACCCCTTGAG CGGCCAGACG
GCAGCGAATG CCATCCACCA GTATCGCCAC GACCGCGATC CGCGTGAACC AATCTTCGAG
TTCACCAAGC GCGCGCTGGT GCACTTCGCT GTAGATACTG AAGAAGCACA CATGGCCACT
CGCCTGGCCG GTTCGTCCAC TTACTTCCTG CCGTTCAACC GGGGCATGGA CGGTGGCGCC
GGTAACCCGC CCGATCGTGA AGGGCGCAAC TACAAGACAG CCTACCTGTG GGAAGAGGTG
CTACAGCGCG ACAGCCTGCT CGACCTGCTC GCCCGTTTCC TGCATCTCGA TGTGGAAGAA
AAGACCACTA ACGTCGGTAA GAAGGTGCGC AAGGAAAGCC TGATCTTTCC GCGTTATCAC
CAGTTGCAGG CTGTGCGCCG GATGGTGGCG GCCGCCGCCA GCGAGGGCGC GGGGCATAAC
TACTTGGTCG AGCATTCGGC CGGCAGCGGC AAGAGCAACA CGATTGCCTG GCTGGCGCAC
CGTCTGTCCA GCCTGCACAA CGAGCGCGAC GAGCGACTGT TTGACAGCGT GGTGGTCATC
ACCGACCGGG TGGTGCTCGA CCGCCAGTTG CAGAACACCA TCTACCAGTT TGACCACCGC
CAGGGCGTTG TGCAGAAGAT CGATGAGGAC TCGCGCCAGC TCGCCGAAGC GCTGGAAGCC
GGCGTGCCAA TCATCATCAC CACGCTGCAA AAATTTCCGT TCGTGTCCGG GCAACTAGCC
AAGCTTAGTG AGGAGCGTGG CGAAGGCAGC AAGAGCCATC TGCCCACGCG CAAGTACGCT
GTAATCATCG ACGAGGCGCA CAGTTCGCAA TCGGGCGAGA CGGCCTCGGA GTTGAAAGGT
GTGCTGGGCG GTGCCGAGCT GCGCCGCAAG GCACAAGAGA TGGCCGAGGA GGAAGGCGAA
GTCGAACTGG AGCGACTGTT CCGTTCCATG GCCAAGAGGG GCCATCAACC GAACATGAGC
TTTTTCGCTT TCACCGCCAC GCCCAAACAC AAGACATTGG CGATCTTTGG CCGGGGCGGC
GAGCCCTTCC ACCGCTACAC CATGCGCCAG GCCATCGAGG AGGGCTTTAT CGAGGATGTG
CTCAAGAGCT ACGTCACCTA CAAGACCTAC TACAAGCTGA TCAAGAAGGC CGAGGACGAC
CCCAACGTCG AGCGCAAGAA GGCGGCCAAG GCGTTGGCCC GTTTCATGCG GCTGCATCCG
CACAACATTG GCCAGAAGAC CGAGGTGATG GTCGAGCATT TCCAACACTT CACGCGGCAC
AAGATCGGCG GCCATGCCAA GGCGATGGTG GTGACCGGCT CGCGACTGGA AGCGGTGCGC
TACAAGCAGG AGTTCGACCG CTACATTCAG GAGAAGGGCT ACCCCATCAA GAGCCTGGTG
GCGTTCTCGG GCACGGTGGA AGACGACAAG ATTCCGGAGA AGTCATACAC GGAAGTCGAG
ATGAATGGCG GCCTGAAGGA GAAGGAACTG CCAGACACCT TCGCCAAACC GGAATTCCGC
GTGCTGCTGG TGGCCGAGAA ATACCAGACC GGCTTCGACC AGCCGTTGTT GCACACCATG
TACGTGGACA AACGGTTGGC GGGCATTCAA GCCGTTCAGA CCTTGTCGCG CTTGAACCGA
ACCCACCCAC TCAAGGACGA TACCTTCGTG CTCGATTTCG TCAACGATCC CGACGAAATC
CAGGAGGCCT TCCGTCAATA CTACGACGGC TCGGTGATGG GCGAGCAGGT AGATCCAGAC
AAGCTCTACG AGGTGAAGGC CGAACTGGAT GCCTCGGGCA TTTACCTGCA AACGGAGATT
GTCGAGTTTG CGCATGTGTT CTTTGCGCCT AAGCGCCGCC AGAGCCCTGG TGACCATAAG
CTGATGAATG CGACTCTTGA TCTGGCGGTC GCGCGCTTTG TGCGGTTGCA GAACACCGAA
GAAGACGAAG CGGAGTTGTG GCGCAGCAAG TTGCAGGCCT TTCGCAATCT GTACGGTTTC
CTGAGCCAGG TGATTCCCTA TCAGGACAGC GATCTGGAAA AACTCTTCAC CTACCTGCGC
CATCTCGCGC TGAAGTTGCC CAAGCGCAAG AGCGGGCCGG GCTATCAGTT CGACGAGGAA
GTCGAACTCG ATTACTACCG CTTGCAGAAA ATCAGCGAAG GCTCGATTAG CCTCAATGAG
GGCTATGCCA AACCGCTTGA CGGCCCGCGA GAGGTGGGCT CAGGCATGGT GCGTGAGGAG
CCCGTTTCGC TGTCACGCCT GATCGACATC ATCAATCAGC GCTTCGGCGG CGAGTTAAAT
GAGGCAGATC AATTGTTTTT CGATCAGATC ACCGAAGCTG CAAGCCAGAA CGAGTCCCTA
CAGAAGGCAG CAGAGGTCAA CTCTCTGGAC AAGTTCCAGC TCGTATTTCG GCAGGTCCTT
GAGTCACTAT TTATCGAGCG CATGGAGTTG AATGAGGAGC TGTTCACTGA TTACATGGGC
AAGCCAGAGA TGCGGGAGCT GGTGTCCAAG TGGTTGGGTA GCCAAGTTTA CGCTCGTCTT
TCGGATAGGG CACCGCAGAG CTAA
|
|---|
| Protein sequence | MKRTSEVAFE TAIEAVLLSE GYTRVDVKGF DRERAIFLDE ALAFIRATQG KVWEKLEALH
GEQTGARVLE SLCKWLDTHG ALATLRHGFK CFGRTLRIAF FRPAHGLNPE LEARYQANRL
GLTRQLHFSP KSEKSLDVVL SVNGIPVVTL ELKNPLSGQT AANAIHQYRH DRDPREPIFE
FTKRALVHFA VDTEEAHMAT RLAGSSTYFL PFNRGMDGGA GNPPDREGRN YKTAYLWEEV
LQRDSLLDLL ARFLHLDVEE KTTNVGKKVR KESLIFPRYH QLQAVRRMVA AAASEGAGHN
YLVEHSAGSG KSNTIAWLAH RLSSLHNERD ERLFDSVVVI TDRVVLDRQL QNTIYQFDHR
QGVVQKIDED SRQLAEALEA GVPIIITTLQ KFPFVSGQLA KLSEERGEGS KSHLPTRKYA
VIIDEAHSSQ SGETASELKG VLGGAELRRK AQEMAEEEGE VELERLFRSM AKRGHQPNMS
FFAFTATPKH KTLAIFGRGG EPFHRYTMRQ AIEEGFIEDV LKSYVTYKTY YKLIKKAEDD
PNVERKKAAK ALARFMRLHP HNIGQKTEVM VEHFQHFTRH KIGGHAKAMV VTGSRLEAVR
YKQEFDRYIQ EKGYPIKSLV AFSGTVEDDK IPEKSYTEVE MNGGLKEKEL PDTFAKPEFR
VLLVAEKYQT GFDQPLLHTM YVDKRLAGIQ AVQTLSRLNR THPLKDDTFV LDFVNDPDEI
QEAFRQYYDG SVMGEQVDPD KLYEVKAELD ASGIYLQTEI VEFAHVFFAP KRRQSPGDHK
LMNATLDLAV ARFVRLQNTE EDEAELWRSK LQAFRNLYGF LSQVIPYQDS DLEKLFTYLR
HLALKLPKRK SGPGYQFDEE VELDYYRLQK ISEGSISLNE GYAKPLDGPR EVGSGMVREE
PVSLSRLIDI INQRFGGELN EADQLFFDQI TEAASQNESL QKAAEVNSLD KFQLVFRQVL
ESLFIERMEL NEELFTDYMG KPEMRELVSK WLGSQVYARL SDRAPQS
|
|---|
| |