| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3285 |
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| Symbol | rpsA |
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| ID | 4668436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | + |
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| Start bp | 3632465 |
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| End bp | 3634150 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639824483 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_971619 |
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| Protein GI | 120611941 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00279338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGAAT CTTTTGCCGC CCTTTTTGAA GAATCCCTGC AGCGCACCGA AATGCGCCCG
GGCGAAGTCA TCACCGCCGA AGTCGTGCGC GTCGAGCACA ACTTCGTCGT GGTGAACGCA
GGCCTCAAGT CCGAAGCCTA CGTGCCCCTC GAGGAATTCA AGAACGACAA GGGCGAGGTC
GAAGTCCAGG TGGGCGATTT CGTCTCCGTG GCCATCGGCT CGATCGAAAA CGGTTACGGC
GACACCATCC TGTCGCGCGA CACCGCCAAG CGCCTGGCCT CGTGGCTCGC GCTGGAAAAG
GCCCTGGAAT CCGGCGAATT CGTCACCGGC ACGACCAGCG GCAAGGTCAA GGGCGGCCTC
ACCGTCCTGG TCAACGGCAT CCGCGCCTTC CTGCCCGGTT CGCTGATCGA TACGCGTCCG
ATCAAGGATC TGACGCCGTA CGAGAACAAG ACCATGGAAT TCAAGGTCAT CAAGCTCGAC
CGCAAGCGCA ACAACGTGGT GCTGAGCCGC CGCGCCGTGG TGGAAGCCTC CATGGGCGAA
GAGCGCGCCA AGCTGATGGA AACCCTGAAG GAAGGCTCCA TCGTGCAGGG CGTGGTCAAG
AACATCACCG AATACGGTGC GTTCGTGGAC CTGGGCGGCA TCGACGGTCT GCTGCACATC
ACCGACATGG CATGGCGCCG TGTCCGCCAC CCCTCCGAGG TGGTGCAGGC CGGTCAGGAA
ATCACGGCCA AGATCCTCAA GTTCGACACC GAGAAGAACC GCGTCTCCCT GGGCCTGAAG
CAGATGGGCG ACGATCCGTG GCTGGGCGTG TCGCGCCGCT ACCCCTCGGG CACGCGCCTG
TTCGGCAAGG TCACGAACAT CGCCGACTAC GGTGCGTTCG TGGAACTCGA GCCCGGCATC
GAAGGCCTGG TGCACGTTTC CGAAATGGAC TGGACGAACA AGAACATCGC CCCGTCCAAG
CTCGTGTCGC TGGGTGACGA AGTCGAAGTC ATGGTCCTCG AGATCGACGA AGACAAGCGC
CGCATCAGCC TGGGCATGAA GCAGTGCAAG GCCAACCCGT GGCAGGAATT CGCGCAGAAC
ACCAAGCGCG GCGACCGCGT CAAGGGCCCG ATCAAGTCGA TCACCGACTT CGGCGTGTTC
GTGGGCCTGG CTGCCGGCAT CGACGGTCTG GTGCACCTGT CCGACCTGTC CTGGAACGAG
CCCGGCGAAG CCGCCGTGCG CAACTACAAG AAGGGCCAGG AAGTCGAGGC GATCGTGCTG
GCCGTGGACG TGGACCGCGA GCGCATCTCC CTGGGCATCA AGCAGCTCGA CGGCGACCCG
TTCACCACCT TCGTGACGGT GAACGACAAG GGCCAGACGG TGACCGGCAA GGTCAAGACC
GTCGATGCCC GCGGCGCCGA GATCGACCTG GGCGAAGACA TCGTGGGCTA CCTGCGCGCT
TCGGAAATCT CCCGCGACCG CGTGGAAGAT GCCCGCAACG TGCTCAAGGA AGGCGACGAA
GTCACGGCCG TGGTGGTGAA CGTGGATCGC AAGACCCGCA ACATCCAGCT GTCGATCAAG
GCCAAGGACA TGGCCGACGA GCAAGGCGCC ATGGCGTCCC TGTCGCAGCA ATCGGCCCGC
GAAAGCGCGG GTACGACCAG CCTGGGCGCT CTGCTGCGCG CCAAGCTGGA CAACTCCGAC
AAGTAA
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| Protein sequence | MSESFAALFE ESLQRTEMRP GEVITAEVVR VEHNFVVVNA GLKSEAYVPL EEFKNDKGEV
EVQVGDFVSV AIGSIENGYG DTILSRDTAK RLASWLALEK ALESGEFVTG TTSGKVKGGL
TVLVNGIRAF LPGSLIDTRP IKDLTPYENK TMEFKVIKLD RKRNNVVLSR RAVVEASMGE
ERAKLMETLK EGSIVQGVVK NITEYGAFVD LGGIDGLLHI TDMAWRRVRH PSEVVQAGQE
ITAKILKFDT EKNRVSLGLK QMGDDPWLGV SRRYPSGTRL FGKVTNIADY GAFVELEPGI
EGLVHVSEMD WTNKNIAPSK LVSLGDEVEV MVLEIDEDKR RISLGMKQCK ANPWQEFAQN
TKRGDRVKGP IKSITDFGVF VGLAAGIDGL VHLSDLSWNE PGEAAVRNYK KGQEVEAIVL
AVDVDRERIS LGIKQLDGDP FTTFVTVNDK GQTVTGKVKT VDARGAEIDL GEDIVGYLRA
SEISRDRVED ARNVLKEGDE VTAVVVNVDR KTRNIQLSIK AKDMADEQGA MASLSQQSAR
ESAGTTSLGA LLRAKLDNSD K
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