| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3171 |
|---|
| Symbol | |
|---|
| ID | 4665799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 3499417 |
|---|
| End bp | 3500184 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639824371 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_971508 |
|---|
| Protein GI | 120611830 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0188228 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.918751 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGC GCGTCCTCCT GCGGACCGAG CGACTGGTGC GCCGCTTCGG CGGCCTGCTC
GCCACCGACC ATGCGGAACT GTCGGTGCTC GAAGGCGAGG TGCATGCGCT CATCGGCCCC
AACGGCGCCG GCAAGACGAC GCTGATCCAC CAGCTCTCCG GCACGCTGGC GCCCACCAGC
GGGCACATCC ATTTCGACGG CGAGGATGTC ACCGGCCTGC CGATCCATGC GCGTGTGAAG
CGCGGGCTGG TGCGCTCCTA CCAGATCACC AGCGTCTTCC CTCGCCTGCC GGTGCTGGAC
AACCTCGCGC TCGCCGTGCA GGCACGCACC GGCGGCGCCC GCGGCTTCTG GCGCCCGGCC
CGCGCCGGGC GCGGGCGCTA TGCCGAGGCG CAGGCCGTGG CGGAGCGCAT CGGCCTGGGG
GACCGATCGG CGCAACTGGC CGGGGCGCTG TCGCACGGCC AGCAACGGCA GCTCGAAGTC
GGGTTGGCGC TGGCGCTGCG GCCGCGGCTG CTGCTGCTCG ACGAACCCAT GGCCGGCATG
GGGCCGGAAG AATCCGAGCG CATGGTCGGC CTGCTGCAGG GGCTGCGCGG CGAGGTCACG
CTGCTGCTGG TGGAGCACGA CATGGATGCC GTCTTCCGCC TGGCCGACCG CATCTCCGCG
CTCGTCTCGG GCCGCGTGAT CGCCTCCGGC ACCCCGCAGG AAATCCGCAA CGATCCCGGC
GTGCGTCGCG CCTACCTGGG CGACGAACTG GAGGAGGCCA CGCCATGA
|
|---|
| Protein sequence | MSARVLLRTE RLVRRFGGLL ATDHAELSVL EGEVHALIGP NGAGKTTLIH QLSGTLAPTS
GHIHFDGEDV TGLPIHARVK RGLVRSYQIT SVFPRLPVLD NLALAVQART GGARGFWRPA
RAGRGRYAEA QAVAERIGLG DRSAQLAGAL SHGQQRQLEV GLALALRPRL LLLDEPMAGM
GPEESERMVG LLQGLRGEVT LLLVEHDMDA VFRLADRISA LVSGRVIASG TPQEIRNDPG
VRRAYLGDEL EEATP
|
|---|
| |