| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2988 |
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| Symbol | |
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| ID | 4668964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 3286902 |
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| End bp | 3289217 |
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| Gene Length | 2316 bp |
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| Protein Length | 771 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639824188 |
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| Product | ribonuclease R |
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| Protein accession | YP_971329 |
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| Protein GI | 120611651 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.216479 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTATATCA AAAAAACCAA AGCCGTTGCA AACGTCGCGC ACTCCGATGA CGAAATCGAA
GGCAGCGTGC AGGGCCACCG CGACGGCCAC GGATTCGTGC AGCGCGACGA CGGCGATGCC
GACATCTATA TCCCCGCCAA CGAGATGCGG GCGGTGCTCC ACAAGGACCG CGTGCGCGTG
CGCATCGCGC GGCACGACCG GCGCGGCCGG CCAGAGGGCC GCATCGTCGA GATCATCGAA
CGCCCCCAGC ACCCGATCAT CGGGCGCCTG CTGCAGGAAA GCGGTGTGTG GCTGGTGGCG
CCGGAAGACA AGCGCTACGG CCAGGACGTG CTGATCCCCA AGGGCGCGAC CGGCTCGGCC
AAGACCGGGC AGGTCGTGGT GGTGGAGCTG ACGGAGCCGC CCGCGCTGTT CGGGCAGCCC
GTGGGCCGCG TCACGGAAGT GCTGGGCGAG GTGGACGATC CCGGCATGGA GATCGAGATC
GCCGTGCGCA AGTACGGCGT GCCGCACGAG TTCTCGCAGG AGGCGCTGGC GCAGGCCAAG
GCCCTGCCCG ACAAGGTGCG CGCGCAGGAC AAGCGCCACC GCATCGACCT GACCGACGTG
CCCCTGGTGA CCATCGACGG CGAAGATGCC CGTGACTTCG ACGACGCCGT GTATTGCGAG
CCGGCGCGCG TCGGCCGCAC CAAGGGCTGG CGCCTGCTGG TCGCGATCGC CGACGTGAGC
CACTATGTGG AGACGGGCAG CCCCATCGAC GTGGACGCCT ATGACCGGGC CACCAGCGTC
TATTTCCCGC GCCGCGTCAT CCCGATGCTG CCCGAGAAGC TGTCCAACGG GCTGTGCTCG
CTCAATCCGG AGGTGGAGCG CCTGTGCATG GTGTGCGACA TGCTGGTCAC CGCCAAGGGC
GAAGTGCACG CCTACCAGTT CTATCCGGCC GTCATGTTCA GCCACGCGCG CTTCACCTAT
ACGGAAGTGG CCGCGATCCT CGCGAACACG CGGGGGCCCG AGGCGACGAA GCGCCGCGCG
CGCGTGCAGG ACCTGCTGAA CCTGCACGAC GTGTACCGTG CGCTGCTGTC GTCGCGGCAC
GCGCGGGGGG CGGTGGATTT CGAGACCACC GAGACGCAGA TCGTCTGCGA CGACAACGGA
CGCATCGAGA AGATCGTGCC GCGCACGCGC AACGATGCCC ACCGGCTGAT CGAGGAAGCC
ATGCTCGCGG CCAACGTGTG CAGCGCGGAC TTCATCGCCC AGGGCGGGCA GCCCGGGCTG
TACCGCGTGC ACGAGGGCCC CACGCCGGAG AAGCAGGAAA TCCTGCGCAA TTACCTGAAG
GCCATGGCGG TGGGCATGAC GATCGGTGAC GATCCGAAGC CCGGCGACTT CCAGGCCATC
GCGGAGGCCA CGAAGGACCG CCCGGACGCG CAGCAGATCC ACACGATGCT GCTGCGCTCC
ATGCAGCAGG CCATCTACAC CCCTGTGAAC AGCGGCCATT TCGGGCTGGC CTACGAGGCC
TACACGCATT TCACCAGCCC GATCCGGCGC TACCCCGACC TGCTGGTGCA CCGCGTCATC
AAGGCCATCC TGGGCCAGAC CAAATACCGG CTGCCGGCAC TGCCCGTGCC GGGCGAGGCG
CACGCCAAGC TCGCCAAGCG CCTCGCCGCG CGGCTGCCGG CGCCGACGCA GCAGCCGCGC
AAGCCGCTGT CCGCCGCCGC GGTCCGCGAG GTGCAGGCCT GGGAGGCCGC CGGCCTGCAC
TGCAGCGCCA ACGAGCGCCG GGCCGACGAG GCCAGTCGCG ACGTCGAGGC GTGGTTGAAG
TGCAAGTACA TGCGCGAGCA CCTGGGCGAG GAGTTCAGCG GCCTGGTCAC GGCCGCGACC
AGTTTCGGCA TCTTCGTGAC GCTGGACGCG ATGTATGTCG AGGGGCTGGT GCACATCACG
GAGCTGGGGG GCGAGTACTT CAAGTTCGAC GAGGCGCGTC AGGAGCTGCG TGGCGAGCGC
ACGGGCATCC GCTATGCCAT CGGCACGCGG GTGCGCGTGC AGGTCAGCCG CGTGGACCTG
GATGGGCGAC GCATCGACTT CCGGCTGGTG CGCGAGGGCG AGGAGTCGCT GCCGCCCGCG
CGCGCTTCCC GCGGCCGCGG AGGGCGCGAG CCGGCGGAGC CCATGCTCCC GGCATCCGCC
GACGGAGCGG GGGCGGAGCG CAGCCGCAAC AAGGCCCGCA AGGGCGCTTC GAGGGCTGCC
CGGCCGCAGG ACGCCCCCGC GGCGCCGCGC AAGGCGGCGG CCAAGGGCTC CGGACGCCGC
TCCGGAGCGG CCAAGCGGGG CAAGTCGCGC CGCTGA
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| Protein sequence | MYIKKTKAVA NVAHSDDEIE GSVQGHRDGH GFVQRDDGDA DIYIPANEMR AVLHKDRVRV
RIARHDRRGR PEGRIVEIIE RPQHPIIGRL LQESGVWLVA PEDKRYGQDV LIPKGATGSA
KTGQVVVVEL TEPPALFGQP VGRVTEVLGE VDDPGMEIEI AVRKYGVPHE FSQEALAQAK
ALPDKVRAQD KRHRIDLTDV PLVTIDGEDA RDFDDAVYCE PARVGRTKGW RLLVAIADVS
HYVETGSPID VDAYDRATSV YFPRRVIPML PEKLSNGLCS LNPEVERLCM VCDMLVTAKG
EVHAYQFYPA VMFSHARFTY TEVAAILANT RGPEATKRRA RVQDLLNLHD VYRALLSSRH
ARGAVDFETT ETQIVCDDNG RIEKIVPRTR NDAHRLIEEA MLAANVCSAD FIAQGGQPGL
YRVHEGPTPE KQEILRNYLK AMAVGMTIGD DPKPGDFQAI AEATKDRPDA QQIHTMLLRS
MQQAIYTPVN SGHFGLAYEA YTHFTSPIRR YPDLLVHRVI KAILGQTKYR LPALPVPGEA
HAKLAKRLAA RLPAPTQQPR KPLSAAAVRE VQAWEAAGLH CSANERRADE ASRDVEAWLK
CKYMREHLGE EFSGLVTAAT SFGIFVTLDA MYVEGLVHIT ELGGEYFKFD EARQELRGER
TGIRYAIGTR VRVQVSRVDL DGRRIDFRLV REGEESLPPA RASRGRGGRE PAEPMLPASA
DGAGAERSRN KARKGASRAA RPQDAPAAPR KAAAKGSGRR SGAAKRGKSR R
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