| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2838 |
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| Symbol | |
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| ID | 4665106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 3117392 |
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| End bp | 3122356 |
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| Gene Length | 4965 bp |
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| Protein Length | 1654 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639824037 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_971180 |
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| Protein GI | 120611502 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0573188 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCGG CACGGCAGGC GGACGAGATA GGTCACGTGT CGGTGTGGGC GAGGCTGGCG
CGGGTGGGAT TGCGGCTGGC GTCGGGGATG GTGGAGACGC TGCTGGTGGC GGGGGTGGTG
GCGCTGGCGG CGGGGGTGTC GGTGGCGACG ATGGGGTGCG GGGCGATCCT CGCGTGCGGG
CTGCTGGCGG GGTTCATCGG GGGGGCGACG GGCTGGAGCG ACTACAAGGA AAAAAAGATC
CAGGAGATGA CCGAGGACAT CGGGGACCTG GACATCACGG GCACGCTGGG CATCCGCGGG
GCGGCGACCG TGCGCATCAA CGGCCGCGCG GCGATGCGGG CGGTGGCGGA CGCGGCCGTG
TGCCGCGACC ATGGGCAGCC CAACCCGAAC TTCATCGCCG AGGGCTCGGA CTCGGTCTTC
ATCGAGACCT ACCCTGCGGC GCGCAAGGGC GACAAGATGA TGTGCGCCGC GCAGATCGCC
AGCGGCTCGG ACGACGTGCT GGTGGGGGGC AACAAGACGG CGTACCTGGA GATCGCCGAC
GACCGGGCGT GGTGGGAAAC GGCGCTGGAG ATCGGGGTGG GCCTGGCGAT GGGCCGGGGC
AACTTCCTGG GCAAGGTGGG GTGCCTGGCG CTGGGGGCGG TGATGGGCAT GGCGGGCGAC
GCGCTGGGCC GGGGATTCCG GGCGCTGATC GGCTACCCGG TGCACCCGGC CACGGGCGGC
AAGGTGCTGG ACGGCAGCCA GGACACGGAC TTCGTGCTGC CCGGGCCGCT GGGCATTGCC
TGGCGGCGCT TCTACAGCAG CCATGACCAC CGGGGCGGCA CCCTGCACGG CGCGGGCTGG
AGCGTGCCCT ACGAGATCGA GCTGCACGTG GAGCGGCTGG CGGCCGGTGC GCCGCCTTCG
CGCATCACCT ACGTCAACCC GCAAGGCCGG CACATCGAGC TGCCGGCAGT GGCCCCGGGC
ACGGCGCTCT TCAACGTCGG CGAGGGCTTC ACCCTGGGCT GCACGGCGGG CGGGCACTAC
GAGGTGGGCG AGCTCGACCA CGTCGCCTGG CAGTTCGGCC CGGCGCCGCA GGAGGCGGGC
ACGCACGTGC TGAAACTGCT GCGCATCCGC GACCGGTTCG GGCACTGGGT GGGGCTGCGC
TACGACGGCG AGCGGCGCCT GGCGGGCATC GCGGACCACC TGGGGCGGCT GCTGCGGCTG
GATTACCAGG CAGGAACTCG CCTGGTCGCC GCGATCCACC TCGTGCAGGC GGCGCCGGGC
GAGCAGCTGG GCCTGCTGGC GACCTACCGC TACGACGCGG GCGGCCAGCT CGCCGACGTG
CAGGACCGCA CGCGCGCGAC CGTGCGGCGC TTCGCGTATT CCGAGGGCCT GATGGTGCGC
CAGGAGGACG CGGCCGGCTT CGCGTGCCAC TACGCCTGGG AGGATGCGGC GCAGGCCAGC
GGCCCCGAGC GGCAGGATGG TGCCCGGGGA CCCGATGGCC GGCACCTGCG CGACCGCCGG
GTGGTGCGGC ACTGGACGGA GGACGGCGAG AGCTACGCCA TTGCCTATGG CGTGGACGGC
AGCTTCGATG GCGGCCCCGC CGGCGAGACC GGCGGCTGGA CACGGTCAAC CGACCAGCTC
GGGCGCGAGG AGCGCTGGCA GTGGGACCGC TGGCACAACC TCACGGCCTA CACCAACGCG
GTGGGCGCCA CGTGGCGGCT CGCGTGGAAC GAGCGGCGCG AGCTGCTGTC GTGCACGCGG
CCCTCGGGGG CGACCACCAC CTTCCAGTAC GATGACAACG GCATGCAGAC GGGCGTGGTG
GACCCGCTGG GGCGGCTCAC GCGCACGCTC TGGGACAGCC AGTGGTTCGA GCCGCTGCGC
ACCACGGGCC CTGACGGGGC CACGTGGCGC TACGAATACG ACCGCCAGGG CCTGCTGGTG
CAGGAGACGG CGCCCGATGG CGGGGTGACG CGCTACGCCT ACGACGCGCA GGGCCAGGTG
GTGCAGATCC AGGACGCGCT GGGCGGGGCC AGGACCCTGC AATGGAACGA GCGGGGCCTG
CTGGTGCGCC ATACCGACTG CTCGGGGCGC ACGACGCGCT ACGGCTGGGA CGGCTGGGGC
CAGCTGCAAT CGGTGACCGA TGCGCTGGGC CAGCAGACGC AGGGCGTGGT GGACGCGCGC
GGGCAGCTGC GCTCGCTGAG GCTGCCCGAC GGCAGCAGCC AGGGATTCGA ATACGACGCG
GGCGGGCGGC TGGTGGAGCA CACGGACGCG CTCTCGCGGG CCACGCGCTA CGGGCACAAC
GTGCGCGGGC AGCTGCTGTG GCGGCGCGAC GCGCAGGGAC GGGAGATCGG GGCGGCGCAC
GATGGGGCGC ACCGGCTCTC GGCGCTCGCC ACGGAAAACG GCGGCGTCTA TCGGTTCCGC
TACGACGACG CGGACCGGAT GGTGGAGGAA GAGCGCCTGG AGGGCACGCG GGTGGGGCTG
GAATACGACG CGGACGGGCA CGTGGTGGCG GTGGTGCACC ACCCGGCGCG GGGCGAGGAT
GTGTTCCACG AACTGGAGAC CCAGGCGCAG GAAGGCACGC TGCGGGAAGG CCCGGCGGGC
CAGAACGCTC AGGCGCCCAG GCGCACGGAT CTGCAGCGCG ACGCGCTGGG GCGGCTGGTG
GAAAAGCGGG TGGGCGGCAG CGTGCTGCGC TACCGCTACG ACGCGGGCGG GCGGCTGGTG
GAGGCATCGC GCTGGCGGCG CCAGGCCGGA GCGCAAGCCG AATCCAAAGC CGACACTGAA
GCCGAGACCC TGGAGCTGCA GCACACGACA CGCTTCGAAT ACGACGCGCT GGGCCGCATC
GTGGCCGAGC ACGCTCAGGA TGCAGCCAGC GGCCAGGTGC ACACGCTGCG GCATGAACAC
GACGCGCTGG GCAACCGCAC GCGCACGCAG CTGCCGGCGG TCAACAGCCG TGCGGGCCGG
GCCGTGCTGC GGCGCAGCCT GAACTACCTG CACTACGGCT CGGGGCACCT GCACCAGATC
AACCTGGGGC TGGCCGAGGA ACTGGCGCAG GAAGCACCCC AGGAGTCGCT GCCGGGTGAA
ACGCTGCAGG CCAGTGGCCT GGACAACGTG CTGCCCGAAC CGGTACGCGA AGTGCACCGG
CTCATCGCCG ACATCGAGCG CGACGCACTG CACCGGGAGG TGCTGCGCAC ACAGGGCACC
TTGGCCACGC GCTACGCGCT GGACGCGCTG GGACGGCGCA CGGGCAGCTG GACGCGCTCC
GGGCTGGGCC TGCAGGACGC GGCGGGCGAG GACTGGCGCG CGGCATGGCA GCAGCAGGTG
GAGGCGCTGG CCCAGCGCGG CCCCTCGGCG GCCGTGGGGC TGCTCAAGCA GTACCGCTAC
GACGCGGTGG GCGAGCTGCG CGAGAGCGTG CACAGCCACA AGGGGCGCAC GAGCTGGCGC
TACGACGCCA CGGGGCGGGT GGAGCAGGTG CTGCGCGCGG GCCCCGGGGC GCAGCCGGGC
GGGGGCGTGC AGGGCCGCTC GGAAGAAGTG TTCCGCTACG ACCCGGCCGG CAACCTGCTG
GATGCGAGCC TGGCGTCGCG CATGGCGGCC AACGACGGGG GCCCTGGCGG CGCCGGTAGC
CCCGGCACGG GCTCCACGGG CTACCTGCGC GACAACCTGG TGCGGGTGTA CGAGGACAAG
CGCTTCGCCT ACGACGGCTT CGCGCGGCTG CGCGAGAAGC GCATCGGGCG GCACACGGTG
CAGCGCTTCG AGTGGGACGA CGAAGACCAG CTGGTGGCGG TGGAGACCAC GCGCCACCCG
GGCACGGCCC AGGCCACGCG CCAGCGGGTG GAGTTCCGCT ACGACGCGCT GGGCCGGCGC
ATCGCCAAGC AGGACGCGTT CGGGCGCACG GAGTTCATCT GGGAGGGCAT GCGGCTGATC
GAGGAGCGGC GCGGCTCCAA GGTGGTGAGC TACGTGTACG AGCCGGGCAG CTACGTGCCG
CTGGCGCGCA TCGATGCGGA CGGGCAGCGG CTGGAAGGCA GCGGGCATGG CGGACTCGTG
GGCGGTGCAG GATCGGATGC CGCAGGCCGG GCAACCTCAG CCAACCCAGG CACTGGCTAC
GCCTCGCTGA ACCCGATGGC CGCGCCCGGC AGCAGCGCGG CAGGGCAGGC TGCTTCTGCG
TCAGCCCAGA CCCCGGCCGA ATCGCGCCTG CGCGCCAGCG CCCAGGTGAG CTACTTCCAC
AACGACCCCT CGGGCCTGCC GGAAGAGGTG ACCGACGAGG CCGGCGAGGT GCGCTGGCGC
GCGAGCTGGC GCACCTGGGG CAGCGCGCTG GAGGAGCGCT GGGAGGCCGT GCGCATCGAC
GGCAGCGCCA TTCCCGCGGT GCAGCAGCGG CACAGGAACG AGGACACGCT GGAGCAGAAC
CTGCGCCTGC AGGGCCAGTA CCTGGACCGC GAGACGGGGC TGCACTACAA CACCTTCCGG
TACTACGACC CGGATGTGGG GCGGTTCATC AGTCCGGATC CGATCGGGTT GGCGGGTGGA
CTCAACCTGC AGCGGTATGC AGCCAACCCC ATATCGTGGA TCGATCCGCT GGGTCACGAA
AATTATGTGA TTATTGGAGA AGGGCAGGAT GCCGTAAATA GATATGCGAA AATCATGTCG
GACAACCCAA AACTCAAGGG TCATGAATTC AGAACGATTC AAGATGACTG GAAGCCGATG
ATGAGAAAGT CTGGAGCAAG CCGTTTGGAG TTCGGCAGCG CGGAATGGGA GCGCAAGGCA
ATTCAGGCGA ATGTTGACTG GATCAAGGAC AGACATGCCG AAGGGTATAA ATTCATCGAC
ATTGGCGAAG ACGGCTCTCC AAACAGAAGT TCTTTCTACA AGGCAGAGAA GGACGCGCTC
TCTGCGCTGG GTGTAAAGCC CATGAAGGGG AACTCCACTC ACATCGCAGC AGCCCGGGCA
GCTGCGAAAC CCAGTGGAAG ACCGCCGTCA AAAACAGGAT GCTGA
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| Protein sequence | MAAARQADEI GHVSVWARLA RVGLRLASGM VETLLVAGVV ALAAGVSVAT MGCGAILACG
LLAGFIGGAT GWSDYKEKKI QEMTEDIGDL DITGTLGIRG AATVRINGRA AMRAVADAAV
CRDHGQPNPN FIAEGSDSVF IETYPAARKG DKMMCAAQIA SGSDDVLVGG NKTAYLEIAD
DRAWWETALE IGVGLAMGRG NFLGKVGCLA LGAVMGMAGD ALGRGFRALI GYPVHPATGG
KVLDGSQDTD FVLPGPLGIA WRRFYSSHDH RGGTLHGAGW SVPYEIELHV ERLAAGAPPS
RITYVNPQGR HIELPAVAPG TALFNVGEGF TLGCTAGGHY EVGELDHVAW QFGPAPQEAG
THVLKLLRIR DRFGHWVGLR YDGERRLAGI ADHLGRLLRL DYQAGTRLVA AIHLVQAAPG
EQLGLLATYR YDAGGQLADV QDRTRATVRR FAYSEGLMVR QEDAAGFACH YAWEDAAQAS
GPERQDGARG PDGRHLRDRR VVRHWTEDGE SYAIAYGVDG SFDGGPAGET GGWTRSTDQL
GREERWQWDR WHNLTAYTNA VGATWRLAWN ERRELLSCTR PSGATTTFQY DDNGMQTGVV
DPLGRLTRTL WDSQWFEPLR TTGPDGATWR YEYDRQGLLV QETAPDGGVT RYAYDAQGQV
VQIQDALGGA RTLQWNERGL LVRHTDCSGR TTRYGWDGWG QLQSVTDALG QQTQGVVDAR
GQLRSLRLPD GSSQGFEYDA GGRLVEHTDA LSRATRYGHN VRGQLLWRRD AQGREIGAAH
DGAHRLSALA TENGGVYRFR YDDADRMVEE ERLEGTRVGL EYDADGHVVA VVHHPARGED
VFHELETQAQ EGTLREGPAG QNAQAPRRTD LQRDALGRLV EKRVGGSVLR YRYDAGGRLV
EASRWRRQAG AQAESKADTE AETLELQHTT RFEYDALGRI VAEHAQDAAS GQVHTLRHEH
DALGNRTRTQ LPAVNSRAGR AVLRRSLNYL HYGSGHLHQI NLGLAEELAQ EAPQESLPGE
TLQASGLDNV LPEPVREVHR LIADIERDAL HREVLRTQGT LATRYALDAL GRRTGSWTRS
GLGLQDAAGE DWRAAWQQQV EALAQRGPSA AVGLLKQYRY DAVGELRESV HSHKGRTSWR
YDATGRVEQV LRAGPGAQPG GGVQGRSEEV FRYDPAGNLL DASLASRMAA NDGGPGGAGS
PGTGSTGYLR DNLVRVYEDK RFAYDGFARL REKRIGRHTV QRFEWDDEDQ LVAVETTRHP
GTAQATRQRV EFRYDALGRR IAKQDAFGRT EFIWEGMRLI EERRGSKVVS YVYEPGSYVP
LARIDADGQR LEGSGHGGLV GGAGSDAAGR ATSANPGTGY ASLNPMAAPG SSAAGQAASA
SAQTPAESRL RASAQVSYFH NDPSGLPEEV TDEAGEVRWR ASWRTWGSAL EERWEAVRID
GSAIPAVQQR HRNEDTLEQN LRLQGQYLDR ETGLHYNTFR YYDPDVGRFI SPDPIGLAGG
LNLQRYAANP ISWIDPLGHE NYVIIGEGQD AVNRYAKIMS DNPKLKGHEF RTIQDDWKPM
MRKSGASRLE FGSAEWERKA IQANVDWIKD RHAEGYKFID IGEDGSPNRS SFYKAEKDAL
SALGVKPMKG NSTHIAAARA AAKPSGRPPS KTGC
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