Gene Aave_2560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_2560 
Symbol 
ID4665098 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp2812507 
End bp2813454 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content67% 
IMG OID639823764 
Productintegrase catalytic subunit 
Protein accessionYP_970907 
Protein GI120611229 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0278482 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00231503 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAACAGTC ATAAGCATGC GCGATTGACC CGCGCAGGTC GAGCCCTTCT GGTCGACAGA 
GTGCTCCAGC AGAACTGGAC GATGCGCCAA GCCAGCGAAG CCGCAGGCGT GAGCCTGCGC
ACCGGCTACA AGTGGATGGC CCGCTTTCGC AACGAAGGCC CCGATGGCTT GCTCGACCGC
AGCTCCCGCC CGCACCGCAG CCCCCAGGCC TGCCCACCCG AGCAGGTCCA GCTGTTCGAA
CAGCAGCGCC GCCAGCGCTT GCCCCTTTGG CGCATCGCCC GTGAGACCGG CCGCAGTCTG
GCGACCGTAG CGCGCCACAT GGACCGCATC GGCCTGAGCC GGCTCGCATC GCTGGAGCCA
CCGCAGCCCG TGCGTCGCTA CGAGCGCGCC AGCCCGGGCG AACTGCTGCA CATCGACACC
AAGCGGCTCG GCCGCATCCA CGGCGTGGGC CACCGCATCA CCGGCGACCG AACCCAGAAC
CGCAACCGTG GCATCGGTTG GGATGCGGTG CATCTGGCCA TCGACGACCA CTCCCGCGTG
TCCTTCGCCC AGGTCCTGGC CGACGAGACA GCGCTGAGTT GCGTGCAGTT CCTGCGAGAC
GCGGTGGCCT ACTACGCCAA CATCGGCGTA CGCATCGAGC GCGTCATGAC CGACAACGGC
TCTGGCTACA AAAACGCCTT CCGCGCGGCC TGCGAGGAAT TGGGCATCCG CCACATCCGC
ACGCGGCCCT ATACGCCCAA GACCAACGGC AAGGCCGAGC GATTCGTACA GACCAGCCTG
CGGGAGTGGG CCTATGCCAG ACCCTACGAA AGCTCAGCCC AACGCACGGC TGCCCTGCAG
CCCTTCATTG ACGGCTACAA CTGGTGCCGG CCACACTCCG CGCTCGGCCA TCAGCCTCCC
ATCACACGCA TTCCGGGTGT GAACAACCTC GTGAGACTCA ACACCTAG
 
Protein sequence
MNSHKHARLT RAGRALLVDR VLQQNWTMRQ ASEAAGVSLR TGYKWMARFR NEGPDGLLDR 
SSRPHRSPQA CPPEQVQLFE QQRRQRLPLW RIARETGRSL ATVARHMDRI GLSRLASLEP
PQPVRRYERA SPGELLHIDT KRLGRIHGVG HRITGDRTQN RNRGIGWDAV HLAIDDHSRV
SFAQVLADET ALSCVQFLRD AVAYYANIGV RIERVMTDNG SGYKNAFRAA CEELGIRHIR
TRPYTPKTNG KAERFVQTSL REWAYARPYE SSAQRTAALQ PFIDGYNWCR PHSALGHQPP
ITRIPGVNNL VRLNT