| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2506 |
|---|
| Symbol | |
|---|
| ID | 4666625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 2743016 |
|---|
| End bp | 2746180 |
|---|
| Gene Length | 3165 bp |
|---|
| Protein Length | 1054 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639823709 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_970853 |
|---|
| Protein GI | 120611175 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.213687 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.043274 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAGC GAATCATCCA TTTCTCCATT GCCCATCGCT GGCTCGTGAT GCTCGCCGTC
GCGGGCATGG CCGCACTGGG CATCTACAAC TACCAGCGCC TGCCCATCGA TGCGGTGCCG
GACATCACCA ATGTCCAGGT GCAGATCAAC ACGGCGGCAC CCGGCTACTC CCCGCTGGAG
ACGGAGCAGC GGATCACCTA TCCGATCGAA ACGGTGATGG CGGGGCTCCC GGGACTGAAG
CAGACCCGTT CCCTGTCGCG CTACGGGCTG TCGCAAGTCA CGGTGATCTT CGAGGACGGC
ACGGACATCT ATTTCGCCCG CCAGCTGGTC AACGAACGCA TCCAGGCCGT GCGCGAGCAG
ATGCCCGAAG GCGTGGGGCC CGTGATCGGA CCGATTTCGA CGGGCCTGGG CGAGATCTAC
CTGTGGACCG TGGAGGCGGA GGAGGGTGCG CGGCGCCCGG ACGGCAAGGC GTACACGCCC
ACCGACCTGC GCGAGGTCCA GGACTGGATC ATCAAGCCGC AACTGCGCAA TGTGAAAGGC
GTGACCGAGA TCAACAGCAT CGGCGGATTC GCCAAGGAGT ACCAGGTGGC GCCGAGCCCT
GAAAAACTCC ATGCCCATGG CCTGACGCTC GCCGATGTCG TCACGGCACT GGAGCGCAAC
AACGAGAACG TGGGGGCCGG CTACATCGAG CGCCGCGGCG AGCAGTACCT GATCCGGGCG
CCCGGCCAGG TGCGGACCAT CGAGGATGTC GGAAACATCG TCGTCAGCAA CGTGGCGGGC
GTTCCCATCC GCATCGGCGA CGTGGGCGAG GTGATCGTCG GCAGGGAGCT GCGCACCGGA
GCGGCCACGG ACAATGGCAA GGAAGTGGTT CTCGGCACGG TGTTCATGCT CATCGGAGAG
AACAGCCGCA CGGTGTCGCA GGCCGTGGAC CGGAAGATGG AGGAAATCAA CCGGACCCTG
CCCGCGGGCG TGAAGGCCGT GACGGTCTAT GACCGCACGG TGCTCGTGGA CAAGGCGATC
GCCACGGTGA AAAAGAACCT CCTGGAGGGC GCGATCCTGG TGATCGCCGT GCTCTTCGCA
TTCCTCGGAA ACATCCGCGC GGCGCTGATC ACCGCCATGG TCATTCCACT GGCAATGCTC
TTCACCTTCA CGGGTATGGT CTCGCAGAAG GTCAGCGCCA ACCTCATGAG CCTCGGAGCA
CTGGACTTCG GGATCATCGT GGACGGCGCT GTGGTGATCG TGGAGAACTG CGTTCGGCGA
CTGGCCCATG TGCAGCAGGC ATCGGGGCGG GCGCTCTCCT TGAAGGAGCG GTTCGCCGAA
GTGTTCGAGG CCGCCCGGGA AGCCCGGCGC CCGCTGATCT TCGGCCAGCT CATCATCATG
GTGGTGTATC TGCCGATCTT CGCGCTGACG GGGGTCGAAG GGAAGATGTT CCATCCCATG
GCCTTCACCG TCGTGATGGC GCTGCTCGGC GCGATGATCC TGTCGGTGAC CTTCGTTCCG
GCCGCGGTCG CGCTTTTCAT CGGCAGGTAT GTCGCGGAAA AGGAAAACCG GATGATGGCC
TGGCTGCGCG GACGCTACGA ACCGCTGCTG GAGCGGGCGC TCGGCGCGAA GCTGGTGGTG
CTCACGGCGG CCATGGCGGC CATGGCGGCC ATCGTCCTGT GCGGGCTCAT GGCGACCCGC
CTGGGCACCG AGTTCGCCCC CAACCTCAGC GAAGGAGACC TCGCGATCCA GGCCATCCGC
ATCCCGGGAA CCAGCCTCAG CGAATCGGTC GCGATGCAGC AGAAGATCGA GGTCGCCGTG
AAGGCGAAAT TCCCCGAGGT CCGGCGTGTC TTCGCGCGGA CGGGCACCGC GGAGATCGCC
TCCGATCCGA TGCCGCCGAA CATTTCCGAC GGCTACATCA TGCTGAACCC GGTGAGCGAC
TGGCCCGAGC CGCGCAAGAC CCCGGCGGAG CTGCGGGATG CCATCCAGAA GGAGGTCGAG
AAGATCGCCG GGAACAGCTA CGAGTTCTCG CAGCCCATCC AGCTGCGCTT CAACGAGCTC
ATCTCCGGCA TCCGCAGCGA CGTCGCGGTG AAGATTTTCG GCGACGACAT GGAGGTGCTG
AACAAGGCAG CGACGGAAGC GGCGGCCGTG TTGCAGAAGC TGGGCGGCGC CTCCGAAGTC
AAGGTCGAGC AGACCACCGG CCTGCCTGTC CTCACCGTGG GCATCGACCG CTCAAGGGCC
GCGCGCTATG GCCTGAACAT CGCGGATGTG CAGTCCACCC TGGCGACGGC CGTGGGCGGC
CGGCGCGCTG GCACGATGTT CGAAGGCGAC CGTCGCTTCG ACATCCTGGT GCGCCTGCCG
GAGGATGTCC GGACCGACCT GGAGGCGATC CGCCGGCTGC CCATCGCCCT GCCCAGGACC
AGCAGTGCCG CGACGTCTTT CATCCCGCTG GGCGAGGTGG CTTCCCTGGA CATCGCGCCG
GGGCCCAACC AGGTGAGCCG CGAGAACGGC AAGCGCCGGA TCGTCGTCAG CGCCAACGTG
CGCTCGCGGG ACCTCGGCTC CTTCGTGTCG GAGGCGCAGG CGGCGATCCG GCAGGTCGCG
CTGCCCTCCG GCTACTGGGT GGAATGGGGC GGCCAGTTCG AGAACCTGCA GTCCGCGGCG
AGCCGCCTGA AGATCGTGGT GCCGGTATCG CTCGGCCTGG TGTTCGTGCT GTTGTTCGCC
ATGTTCGGCA ACGCGCGGGA CGGGCTGCTG GTGTTCACGG GGATACCGTT CGCGCTGACG
GGCGGGGTCC TCGCGCTCTG GCTGCGCGAC ATCCCGTTGT CCATCTCCGC GGGCATCGGG
TTCATCGCGC TGTCCGGGGT GGCGGTGCTC AATGGCCTGG TGATGCTGTC GTTCATTCGG
CAGCTGCGCG AAGAAGGCAT GCCGCTGCCC GAGGCGGTAC GTGCCGGCGC GGTGCAGCGC
CTGCGGCCGG TGCTCATGAC GGCGATGGTG GCATCGCTCG GCTTCATGCC CATGGCCGTT
GCCACGGGGA CCGGGTCGGA GGTGCAGCGC CCGCTGGCGA CGGTCGTGAT CGGCGGCATC
CTGTCGTCCA CCATCCTGAC GCTGCTGGTG CTCCCGCTGA TCTACAGCAT GGCGCACCGC
CGGGGCGGCA TGCCCGCCAA CGGTGGGCCG GAATCCGCGA GCTGA
|
|---|
| Protein sequence | MFERIIHFSI AHRWLVMLAV AGMAALGIYN YQRLPIDAVP DITNVQVQIN TAAPGYSPLE
TEQRITYPIE TVMAGLPGLK QTRSLSRYGL SQVTVIFEDG TDIYFARQLV NERIQAVREQ
MPEGVGPVIG PISTGLGEIY LWTVEAEEGA RRPDGKAYTP TDLREVQDWI IKPQLRNVKG
VTEINSIGGF AKEYQVAPSP EKLHAHGLTL ADVVTALERN NENVGAGYIE RRGEQYLIRA
PGQVRTIEDV GNIVVSNVAG VPIRIGDVGE VIVGRELRTG AATDNGKEVV LGTVFMLIGE
NSRTVSQAVD RKMEEINRTL PAGVKAVTVY DRTVLVDKAI ATVKKNLLEG AILVIAVLFA
FLGNIRAALI TAMVIPLAML FTFTGMVSQK VSANLMSLGA LDFGIIVDGA VVIVENCVRR
LAHVQQASGR ALSLKERFAE VFEAAREARR PLIFGQLIIM VVYLPIFALT GVEGKMFHPM
AFTVVMALLG AMILSVTFVP AAVALFIGRY VAEKENRMMA WLRGRYEPLL ERALGAKLVV
LTAAMAAMAA IVLCGLMATR LGTEFAPNLS EGDLAIQAIR IPGTSLSESV AMQQKIEVAV
KAKFPEVRRV FARTGTAEIA SDPMPPNISD GYIMLNPVSD WPEPRKTPAE LRDAIQKEVE
KIAGNSYEFS QPIQLRFNEL ISGIRSDVAV KIFGDDMEVL NKAATEAAAV LQKLGGASEV
KVEQTTGLPV LTVGIDRSRA ARYGLNIADV QSTLATAVGG RRAGTMFEGD RRFDILVRLP
EDVRTDLEAI RRLPIALPRT SSAATSFIPL GEVASLDIAP GPNQVSRENG KRRIVVSANV
RSRDLGSFVS EAQAAIRQVA LPSGYWVEWG GQFENLQSAA SRLKIVVPVS LGLVFVLLFA
MFGNARDGLL VFTGIPFALT GGVLALWLRD IPLSISAGIG FIALSGVAVL NGLVMLSFIR
QLREEGMPLP EAVRAGAVQR LRPVLMTAMV ASLGFMPMAV ATGTGSEVQR PLATVVIGGI
LSSTILTLLV LPLIYSMAHR RGGMPANGGP ESAS
|
|---|
| |