| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2505 |
|---|
| Symbol | |
|---|
| ID | 4666885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 2741757 |
|---|
| End bp | 2743007 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639823708 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_970852 |
|---|
| Protein GI | 120611174 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR00999] Membrane Fusion Protein cluster 2 (function with RND porters)
[TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0949204 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0148068 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAA ATACCGATAC TTCCACGGGC AAGGTCCAGG CCAGCCATGT GGTTCTCGTC
ATCGTCCTGG TCGTCCTGAC CGCCGTCGCC GGGTTCTTCA TCCTCCGCCC CGCGAAACCC
GGTGGCGCCG ATGGGTACGC GGCCGACGCG CGGCCGGCGG ACGCGCATGG CGAGGGCCAT
GCCGGGGAAC CTGAGGAACA TGGCCGCGAG GAGGGCCATG AAAAGGGCCG AATCGCCTTC
TCGGACGAGC AGTTCAAGTC CTCCGGCGTG GCCGTCGAAA CGAGCGGGCC CGGAGTGATC
GAGACCCGCA CCCGGCTGCC CGGTGAAATC CGGTTCAACG AGGACCGCAC GGCGCACGTG
GTCCCCCGCG TCGCCGGTGT CGTCGAAAGC GTCGGCGCCG ATCTGGGGCA GCACGTACGC
AAGGGCCAGG TTCTGGCCGT CATCTCCAGC GTGGCGCTGT CCGAGCAGCG CAGCGAACTG
CTGGCCGCAC AGAAGCGCCT GGCCCTGGCC CGTACCACCG CGGACCGCGA GCGCAGGCTG
TTCCAGGACA AGATCTCGGC CCAGCAGGAC GTCCTGCAGG CAGAGCAGGT TCTGCACGAG
GCGGAGATCG CCGTCGCGAA CGCCAGCCGG AAGCTGCGGG CACTGGGAGC GGCCGCCAGC
TCCGGCGATC TTGCGCGGTT CGAGCTGCGG GCGCCCTTCG ATGGCATGGT GGTCGAAAAG
CACATTGCGC TGGGCGAGTC GGTGAAGGAA GACGCGAATG TGTTCACCAT CTCCGACCTC
TCCACGGTGT GGGCCCAGAT CAATGTGACG GCGGCCAACC TGCCGCTGGT GAAGGTCGGG
GAGCCCGTGG CCATCCAGGC AACAGGCTTC CAGCATGAGG CGACCGGCAA GGTGTCGTAT
GTCGGCGCGC TCATCGGGGA GCAGACGCGC ACCGCCACGG CACGCGCGAC GCTGCCGAAT
CCCGAGATGG CGTGGCGTCC CGGATTGTTC GTCACGGTGG AACTGGTCAC CGGCAAGGCC
GAGGCGCCTG TCACCGTGGC CGCGGACGCC ATCCAGATGG TGGAGGGCCG CCCGACCGTG
TATGCGAAGG TGGACGGCGG ATTCGAGCCG AGACCCGTCA AGACCGGCCG CTCGGATGGC
CGGAGCATCG AGATCCTCGA CGGACTGGCC GCCGGCACTG CCTATGCCGG CAGGGGCAGC
TTCGTCGTCA AGGCACAGCA GGGCAAGGGC TCCTCGGGCC ACGAACACTG A
|
|---|
| Protein sequence | MQKNTDTSTG KVQASHVVLV IVLVVLTAVA GFFILRPAKP GGADGYAADA RPADAHGEGH
AGEPEEHGRE EGHEKGRIAF SDEQFKSSGV AVETSGPGVI ETRTRLPGEI RFNEDRTAHV
VPRVAGVVES VGADLGQHVR KGQVLAVISS VALSEQRSEL LAAQKRLALA RTTADRERRL
FQDKISAQQD VLQAEQVLHE AEIAVANASR KLRALGAAAS SGDLARFELR APFDGMVVEK
HIALGESVKE DANVFTISDL STVWAQINVT AANLPLVKVG EPVAIQATGF QHEATGKVSY
VGALIGEQTR TATARATLPN PEMAWRPGLF VTVELVTGKA EAPVTVAADA IQMVEGRPTV
YAKVDGGFEP RPVKTGRSDG RSIEILDGLA AGTAYAGRGS FVVKAQQGKG SSGHEH
|
|---|
| |