| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2276 |
|---|
| Symbol | |
|---|
| ID | 4665225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 2505702 |
|---|
| End bp | 2506256 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 639823481 |
|---|
| Product | MerR family transcriptional regulator |
|---|
| Protein accession | YP_970628 |
|---|
| Protein GI | 120610950 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR01950] redox-sensitive transcriptional activator SoxR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.101998 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000024461 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCAG CCTCCCGCCA TGCCCCCCCG TCCGCCACCC CCGGCGCATC CATCCGTCCG
GCCGCCGAGG CCCGTTCCCG CCGGCCCGGC CGTGCCGACG TTCCCGAACT CACGGTGGGC
GAGGTCGCCG AACGCAGCGG GCTGGCCGTA TCGGCCCTGC ATTTCTACGA ATCCAAGGGC
CTGATCGCCA GCGTGCGCAG CGCCGGCAAC CAGCGCCGCT ATCCGCGCTC CGTGCTGCGG
CGCGTGGCCG TGATCAAGAT CGCGCAGCGC ATGGGCCTGC CGCTGGCGAC CATCGCGGGC
GCCCTGCAGG CCCTGCCCGA AGGCCGCACG CCCACCGTGG CCGACTGGCG GCGCCTGTCG
GCCGCCTGGC GCGAGGAACT CGACGAACGC ATCGCCACGC TCACGCGCCT GCGTGACCAG
CTCGATGGCT GCATCGGTTG CGGCTGTCTC TCGTTGCGCG CCTGTCCGCT GCGCAACCCG
GACGACGCCC TGGGCGCGGA GGGGGCGGGT CCGCATTTCT CCCCCGACCC GGCCGCGCGC
CGGCGGACAC GCTGA
|
|---|
| Protein sequence | MPPASRHAPP SATPGASIRP AAEARSRRPG RADVPELTVG EVAERSGLAV SALHFYESKG
LIASVRSAGN QRRYPRSVLR RVAVIKIAQR MGLPLATIAG ALQALPEGRT PTVADWRRLS
AAWREELDER IATLTRLRDQ LDGCIGCGCL SLRACPLRNP DDALGAEGAG PHFSPDPAAR
RRTR
|
|---|
| |